Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq4411 116 6e-21 >seq4411 Length=21687 Score = 116 bits (128), Expect = 6e-21 Identities = 222/326 (68%), Gaps = 1/326 (0%) Strand=Plus/Minus Query 200834 GCGAGCTTTCCTGTCAGCTGTATCAGCGTAGCGCTGATATGTTTTTAGGCGTGCCGTTCA 200893 || || | ||||| ||||| ||||| ||||| || || || || | || |||||||||| Sbjct 3486 GCAAGTTGTCCTGCCAGCTTTATCAACGTAGTGCGGACATCTTCCTCGGGGTGCCGTTCA 3427 Query 200894 ACATTGCATCATACGCACTACTGATTCACATGGTAGCCCAACAGGTCAATATGACTGTCG 200953 |||| || |||||| | ||| || ||||| || || || | || ||| | Sbjct 3426 ACATCGCCAGCTACGCATTGTTGACGCATATGGTGGCGCAGCAAACCGGCCTGGATGTGG 3367 Query 200954 GTGATTTCGTATGGACGGGTGGTGACGTACACATCTACAGCAATCACGAAGAGCAGGTTC 201013 | || ||| | ||||| ||||| ||| || | |||| ||||||| || ||||| | Sbjct 3366 GCGACTTCATCTGGACCGGTGGCGACTGCCATCTGTACAACAATCACCTCGAACAGGTGC 3307 Query 201014 GTCTGCAACTGTCTCGTGATCCGCGTCCTTTACCGAAGTTGAAAATTCTTCGTAAGCCGG 201073 ||| || | || | ||| || | |||||| | | || || ||||| | Sbjct 3306 AAACGCAGCTCGCGCGCGCGCCGTTCCCGCTGCCGAAGCTTGAGATCGCGCGCAAGCCCG 3247 Query 201074 ACTCTATCTTCGATTACAAGTTCGAAGACTTTGAGCTTACTGGTTACGAACCGCATCCTG 201133 | || |||||||||||||||||||| ||||| | | | || |||||| ||||||| | Sbjct 3246 ATTCGATCTTCGATTACAAGTTCGAGGACTTCCATATCATCGGATACGAAGCGCATCC-G 3188 Query 201134 CGATAAAAGCACCGGTGGCGATATGA 201159 | |||| |||||||| ||||| Sbjct 3187 CACATCAAGCGCCGGTGGCCGTATGA 3162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 782996374080000