Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq4411 172 8e-38 >seq4411 Length=21687 Score = 172 bits (190), Expect = 8e-38 Identities = 219/298 (73%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 196014 ATGAAACAGTATTTGGAATTGATGCACACCGTGTT-GAACGAAGGTCAC-GAGAAAGCTG 196071 ||||||||||| | || || |||| | || | |||| | | ||| || ||| | | Sbjct 3955 ATGAAACAGTACCTAGACTTCATGCGCCATGTACTCGAAC--ATGGCACAGACAAAACCG 3898 Query 196072 ACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGCA 196131 |||| || ||||| ||||| ||| | ||||| ||||||||||| || ||||||| Sbjct 3897 ACCGCACGGGCACAGGCACGCGCTCGGTGTTCGGCTATCAGATGCGCTTCGACCTGCAGG 3838 Query 196132 AAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGT 196191 ||||||||||||| |||||||| ||||| ||||| | ||| ||| | ||||||||| Sbjct 3837 AAGGGTTCCCGCTCGTCACCACGAAAAAAGTGCACATCAAATCGATCGTGCACGAACTGC 3778 Query 196192 TGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCT 196251 ||||||||||| | ||| ||||||| | | ||| || | || ||| |||| |||| Sbjct 3777 TGTGGTTCCTGCAAGGCAGCACCAACGTGCGCTATTTGCAGGAAAACGGCGTCTCCATCT 3718 Query 196252 GGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 || | || ||||| |||| || || || || || ||||||||||| ||| ||||| Sbjct 3717 GGAACGAATGGGCGGATGCCGAAGGTGAACTCGGGCCCGTCTACGGCGCGCAATGGCG 3660 Score = 143 bits (158), Expect = 4e-29 Identities = 221/314 (70%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 196750 TGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATCG 196809 ||||||| |||||||| || || ||||| ||| |||||||||| || ||||||||||||| Sbjct 3480 TGTCCTGCCAGCTTTATCAACGTAGTGCGGACATCTTCCTCGGGGTGCCGTTCAACATCG 3421 Query 196810 CTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGATT 196869 | ||||| ||||| || |||||||| ||||| | ||| | ||| || | Sbjct 3420 CCAGCTACGCATTGTTGACGCATATGGTGGCGCAGCAAACCGGCCTGGATGTGGGCGACT 3361 Query 196870 TCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGTTGC 196929 || ||||||| || ||||| |||||||||| || || || ||||||| || Sbjct 3360 TCATCTGGACCGGTGGCGACTGCCATCTGTACAACAATCACCTCGAACAGGTGCAAACGC 3301 Query 196930 AGCTCTCCCGTGTACCGCATGATCTGCCTAAGCTCGTTATCAAACGTAAACCGGATTCCA 196989 ||||| | || | ||| ||||| ||||| | ||| || || || ||||| | Sbjct 3300 AGCTCGCGCGCGCGCCGTTCCCGCTGCCGAAGCTTGAGATCGCGCGCAAGCCCGATTCGA 3241 Query 196990 TTTTCGACTATAAGTTCGAAGATTTTGAAATCGTGGGTTACGAAAGCCACCCACCCATTA 197049 | ||||| || |||||||| || || | ||| | || |||||| || || | ||| | Sbjct 3240 TCTTCGATTACAAGTTCGAGGACTTCCATATCATCGGATACGAAGCGCATCCGCACATCA 3181 Query 197050 AGGCACCGGTTGCC 197063 | || ||||| ||| Sbjct 3180 A-GCGCCGGTGGCC 3168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769949633026600