Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq4411 170 7e-38 >seq4411 Length=21687 Score = 170 bits (188), Expect = 7e-38 Identities = 404/597 (68%), Gaps = 14/597 (2%) Strand=Plus/Minus Query 51747 GATCGGACGGGTGTAGGTACTCGATCGGTTTTCGGCGCTCAACTTAGGTATGACCTG-AG 51805 || || ||||| ||| || || ||||| |||||| ||| | | | |||||| || Sbjct 3898 GACCGCACGGGCACAGGCACGCGCTCGGTGTTCGGCTATCAGATGCGCTTCGACCTGCAG 3839 Query 51806 TAAGGGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTCCCATCAGTGGTCGGGGAGTT 51865 ||||| ||||||||| ||||||| || || ||||| || ||| | || || | Sbjct 3838 GAAGGG-TTCCCGCTCGTCACCACGAAAAAAGTGCACATCAAATCGATCGTGCACGAACT 3780 Query 51866 GCTGTGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCAT 51925 ||||||||| || ||| || ||||| | || | || | |||||||| ||| Sbjct 3779 GCTGTGGTTCCTGCAAGGCAGCACCAACGTGCGCTATTTGCAGGAAAACGGCGTCTCCAT 3720 Query 51926 TTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCG 51985 ||| ||||||||||||||| | ||| | || || || || || || ||| ||||| Sbjct 3719 CTGGAACGAATGGGCGGATGCCGAAGGTGAACTCGGGCCCGTCTACGGCGCGCAATGGCG 3660 Query 51986 -TAGTTGGGA--TGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAG-TCGTCAAAT 52041 | || | | | | |||||| | |||||| ||||| | | || |||| | Sbjct 3659 CTCGTGGCCAACACCCGATGGCGGTCA---CATCGACCAGAT-TACGCAGATCGT-GGAG 3605 Query 52042 CAATTAAGAACGA-TCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGAT 52100 || | | ||| || || || || | || || || || |||||||| || || Sbjct 3604 CAGATCCGCTCGACACCGGACTCGCGTCGCCTGATCGTGTCCGCATGGAATGTCGGCGAG 3545 Query 52101 TTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGT 52160 | ||||||| || | || |||||| | | ||||| ||||| || || || || Sbjct 3544 ATTCCGCGTATGGCGCTGCCCCCGTGCCATGCGTTCTTCCAGTTCTACGTTGCCGACGGC 3485 Query 52161 AAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAAC 52220 ||| | || ||||| | ||||| || ||| ||||| ||| | || || ||||| ||| Sbjct 3484 AAGTTGTCCTGCCAGCTTTATCAACGTAGTGCGGACATCTTCCTCGGGGTGCCGTTCAAC 3425 Query 52221 ATTGCCAGCTATTCCTTGCTGACGCATCTGATTGCTCGAGC-AGTTGGCCTTGATGTTGG 52279 || |||||||| | ||| |||||||| || | || | ||| | ||||| ||||| || Sbjct 3424 ATCGCCAGCTACGCATTGTTGACGCATATGGTGGCGC-AGCAAACCGGCCTGGATGTGGG 3366 Query 52280 TGAATTCATTTGGACTGGTGGCGACGTCCATATCTACAACAACCATGTAGATCAGGT 52336 || ||||| ||||| ||||||||| |||| | |||||||| || | || ||||| Sbjct 3365 CGACTTCATCTGGACCGGTGGCGACTGCCATCTGTACAACAATCACCTCGAACAGGT 3309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190012171822350