Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08]
37,135 sequences; 47,671,809 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq2070 167 5e-36
seq9309 113 9e-20
seq4089 113 9e-20
seq940 104 5e-17
>seq2070
Length=5564
Score = 167 bits (184), Expect = 5e-36
Identities = 176/229 (77%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||||||||| || || ||||| || | ||| || || ||||||||||||||
Sbjct 1064 CCACCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 1123
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
||||||||||| ||||| || || || ||||| ||||| | || || ||||| |||
Sbjct 1124 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 1183
Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| || ||||| ||| || ||| | ||||| | |||||| | || ||
Sbjct 1184 ATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 1242
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
||||| ||||| ||||| ||||||| ||||| ||||| |||||||||
Sbjct 1243 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCATT 1291
>seq9309
Length=2487
Score = 113 bits (124), Expect = 9e-20
Identities = 94/115 (82%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| ||||| ||||| || | |||||| || || |||||||||||||| |
Sbjct 1180 ACCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 1121
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986
||| |||||||| ||||| || || || ||||| ||||||| || || ||||||
Sbjct 1120 AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCA 1066
>seq4089
Length=911
Score = 113 bits (124), Expect = 9e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221
|| ||||| |||||||| ||||||| ||||||||||| |||| |||| ||| ||
Sbjct 266 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAGG 207
Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281
|| ||| |||||||||||||||||||| |||||||| || | |||||| || |||
Sbjct 206 TGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTGC 147
Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341
||||| || |||| | || | |||| || || || |||| || || || ||
Sbjct 146 TTCCACACCTGACCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGAC 87
Query 316342 TTTCCCGCGCCGTTTTCACCCACGACACCGAT 316373
|| || || ||||| ||| | ||| ||||
Sbjct 86 TTACCGGCACCGTTGGGACCAAGCACAGCGAT 55
Score = 93.3 bits (102), Expect = 9e-14
Identities = 132/186 (71%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 315651 GTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAG 315710
|||| |||||| ||||| ||||| ||| | ||| | ||| || | |||||| ||
Sbjct 786 GTGAGTAATCATGACCACACCACCGTTGAAGTCCTTGATGGCCGAAGCAAGGGCACCAAG 727
Query 315711 ACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCA 315770
|||||||| | |||| |||||||||||||| || | || ||| || | ||||
Sbjct 726 CGAGTCGCGGTCAAGGTAGTTCGTCGGCTCATCAAGCACAAGGATGTGCGGGTTCAGCCA 667
Query 315771 TAGAGCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGA 315830
| |||||| ||| |||| ||| | || || ||||| ||||| ||||| ||||| ||
Sbjct 666 CATAGCGGCAGCGAGCACGACCTTCACCTTCTGACCACCGGACAGACCACGCATGCGCGA 607
Query 315831 ATGAGT 315836
|| ||
Sbjct 606 GTGGGT 601
>seq940
Length=1581
Score = 104 bits (114), Expect = 5e-17
Identities = 291/444 (66%), Gaps = 12/444 (3%)
Strand=Plus/Minus
Query 273620 AGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGAC 273679
||||||||| || || ||||| | ||||| | || | ||||||| || || ||
Sbjct 897 AGACCAACCCGTACCGATACCCTCCGCGCCATTAATGAGCAGCATCGGGATGATAGGCAC 838
Query 273680 ATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATC 273739
||||| ||||||||| ||||||||||| | || ||| | ||||||||
Sbjct 837 GTAATACACGGGCTCAACGGGGAAACCATCGTCGTCAGCATAGCGCAAGAGCGCATCATC 778
Query 273740 CGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACT 273799
||| ||| || ||||| || | || |||||| ||||| | | ||
Sbjct 777 ATCTTCAGGGAATACAAGACGCGTGTGCTTTTGAAGCAGCGTGAAGATGTAACGAGGGCT 718
Query 273800 CGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGG---CAGTAGCCA 273856
|| || ||||| || || || | | |||||||||||| || ||| |||
Sbjct 717 AGCGGCATCTTTGCCTCCCTGTAGTCGAGTACCAAACTGACCGGACGGATACAGCAGCGG 658
Query 273857 GTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGA 273916
| ||||||| || ||| | ||||| ||||| ||||| || ||| || | ||
Sbjct 657 A---AGGTTGTTGGAGCCCACGAAGTCCTGTGCCATGTTCACAATCGTCGAGTGTAACGA 601
Query 273917 TACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTT 273976
||||||||||||| ||||| ||||||| | |||||| | ||| || |||||
Sbjct 600 AGCCTCGCCGTGGTGGTAGGCCGTGTGTTCACTGCAGTAACCAGCAAGCTGTGCCACCTT 541
Query 273977 CACATCGCTCGTCAAGTTTCGCTTGA---ATGCGGAATACAACACCTTCCGCTGCGAGGG 274033
||| |||||||| | || ||||| | | ||| || | |||||| |||||||||
Sbjct 540 CACCTCGCTCGTTAGCTTGCGCTTCAGACAGGCGAAA---AGCACCTTGCGCTGCGAGAT 484
Query 274034 CTTGAACCCATCAACGACCGATGG 274057
|| | ||||| || || || ||
Sbjct 483 TTTAAGTCCATCGACCACTGACGG 460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046241169666290
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |