Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08]
37,135 sequences; 47,671,809 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq2070 134 1e-26
seq9309 96.9 2e-15
seq5441 82.4 5e-11
>seq2070
Length=5564
Score = 134 bits (148), Expect = 1e-26
Identities = 167/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168
|||| || | ||| | || ||||||||| ||||| |||||| ||||||||||| |||
Sbjct 1062 TTCCACCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGC 1121
Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228
|| ||| |||| ||||||||||| ||||| ||||| | |||||||| || | |
Sbjct 1122 TCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCG 1181
Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288
| | || ||||| ||| ||||||||||||| | | || | ||| | | ||||
Sbjct 1182 GGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCA 1241
Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || | ||| || ||||| ||||| || ||||| ||||| || |||||
Sbjct 1242 CGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCAT 1290
>seq9309
Length=2487
Score = 96.9 bits (106), Expect = 2e-15
Identities = 79/96 (82%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||||||| |||||||||||||| ||||||||||| || | || ||| |||| ||
Sbjct 1162 CACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 1103
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
||||||||| ||||| ||||||| |||||||| ||
Sbjct 1102 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 1067
>seq5441
Length=1678
Score = 82.4 bits (90), Expect = 5e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || | || ||||| ||||| ||| || ||||| | | || |||||||| || | |
Sbjct 233 CCACCCCGCAATCTCAGCACCAAGTGCAGAGTGCTGCCGTACTGAATGTTGTAGTCCGAG 174
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| | || |||| || |||||||| || ||||| || | ||||||||||||| |||
Sbjct 173 AGCTTTCGACCGTCTTCAAGCTGCTTACCTGCAAAAATGATCCGCTGCTGATCTGGAGGG 114
Query 44231 ACACCTTCCTTTTCC 44245
| ||| || | ||||
Sbjct 113 ATACCCTCTTGTTCC 99
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359827474532295
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |