Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq949 134 3e-26 seq7744 84.2 5e-11 >seq949 Length=22177 Score = 134 bits (148), Expect = 3e-26 Identities = 665/1044 (64%), Gaps = 51/1044 (5%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 17845 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAG 17904 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 17905 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 17964 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || |||| | || | |||| | ||||| |||| ||| || || || Sbjct 17965 CTTCCACACCTGACCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 18024 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTG-------GAGTTCAGCGATACCT 319222 || || |||||||| || | |||| |||| | | ||| || || ||| Sbjct 18025 CTTACCGGCACCGTTGGGACCAAGCACAGCGATACGGCTCGACAGAGCGCA-CGTCACCG 18083 Query 319223 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 319281 | || |||| || | | | ||| ||||| || |||| | | | || Sbjct 18084 AGATGTT---GTTGATCGACG----GCTTTGGGGTACCAGGGTACTGGTA-CGAGCAGTT 18135 Query 319282 CGT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 319340 || || ||||||| |||| |||| | | ||||| || ||||| || Sbjct 18136 GGTCAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCCGG 18195 Query 319341 GAAC-----TTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGA 319395 |||| | ||||| ||| || ||| || ||||||| | | ||||| Sbjct 18196 GAACGTGAACTTCACGTTGTC--CGACTC---CAGCTCGTAGTAGGCCTTGGCCTCGGGC 18250 Query 319396 CGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCG 319455 || || ||||| || || || ||||| || |||||||||| || | ||| Sbjct 18251 TTCTGCTCAACGAAGAGAGAAAGGTTGCCCTTATAGATCTTCAGCTTACGG---GTCTCG 18307 Query 319456 TAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACG 319515 || ||||| || ||| || || ||||||||| || |||||||| ||||| || | | Sbjct 18308 TAGTGGATGATGTTGGTACACACGTTGTCGAGGAAGCCAGAGTCGTGGGACACCATGATG 18367 Query 319516 CACGAAAC-GTCCTTAAGGTTGATCAGGTA-TTCAATCAA-CCACCTCACGTTAGACACA 319572 | | || ||| | | | | ||||||| ||| |||| ||| ||||| ||| Sbjct 18368 GAGGTGACAGTCGGCACGCTCG-TCAGGTAGTTC--TCAAGCCAGGCGACGTTCTTGACA 18424 Query 319573 GAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGT 319632 | ||||| |||||||| ||||| ||||| | | || ||||| ||||| ||||| Sbjct 18425 TCCAAGTGGTTCGTCGGCTCATCAAGCAGCAGAATGTCAGCCTTCAGCAGCATAGCACGC 18484 Query 319633 GCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGC 319692 | || |||||||||| ||||| || || ||||| | | | | || || | Sbjct 18485 GACAGCTCGAGTTTCATCTTCCAACCACCCGAAAGGGAGCCCACGGCCTGAGCCTGCATC 18544 Query 319693 TCAATATCAAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTT 319752 || ||||| || | |||| | | || | |||| | | Sbjct 18545 TCGGCGGTGAAGCCGACATCAGCCAGAGCGTCCTCAACCTCCTTGCGAG------GGGTG 18598 Query 319753 TCCTTTACTTGTTCATCATTGGCAATGAAGT----CAATGATAGCCGTGTTAGAATCGGA 319808 ||||| | | |||||| | ||||||| || || ||| | || || || Sbjct 18599 TCCTTCAGGTCGTCATCAATCAGGATGAAGTCGACCACCGAAAGC----TCAGCCTCCGA 18654 Query 319809 CCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTC 319868 | | || | ||| || ||| | |||| |||| | ||| |||||| || || Sbjct 18655 AGCCTGCAGGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCCTTGCTGGGGAAGCCCTC 18714 Query 319869 AAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACA 319928 |||||||||||| |||| ||||||||||| || || ||||| ||||| || || || Sbjct 18715 AAGCTGGCCGTTGGCAATGGCGCGCATCAGCGTCGACTTACCACAACCGTTGGGACCGCA 18774 Query 319929 CAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCC 319988 ||||||||| |||| || || || ||| | || | ||||||||| ||||| | || Sbjct 18775 CAGACCGTAACGGTGGCCACGCTTGAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACC 18834 Query 319989 ACCATATGCCAGAGAAAATTCACA 320012 ||| || || || || || || || Sbjct 18835 ACCGTAAGCGAGCGAGAACTCGCA 18858 >seq7744 Length=2697 Score = 84.2 bits (92), Expect = 5e-11 Identities = 138/194 (71%), Gaps = 10/194 (5%) Strand=Plus/Plus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || ||||||||| | | || ||| | ||||||||||| ||||| |||||||| Sbjct 2089 CTGATCGGCATGAACTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCG---- 2144 Query 230506 TTTGTTGCACT---TGGTTACGAGAAAG-TGTACAACTCTAAGAACCCCTTTGCATTTAT 230561 | || || ||| ||| | | ||| | |||||| |||||||| || | | || Sbjct 2145 TCTGCTGTACTCGCTGGGTGTGTCGAAGATCTACAACGTAAAGAACCCGTTCGACTGGAT 2204 Query 230562 GGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA-TC 230620 ||| | || ||||| || || ||||||||||| ||||| ||||| || | || || || Sbjct 2205 GGACATGATCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTACTC 2264 Query 230621 AGAGGCCTGGTGTG 230634 ||||| |||||| Sbjct 2265 GAAGGCC-GGTGTG 2277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057696137507420