Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq584 149 6e-31 seq7744 138 1e-27 >seq584 Length=26749 Score = 149 bits (164), Expect = 6e-31 Identities = 312/458 (68%), Gaps = 8/458 (2%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || ||||| || || | |||||||| | |||||| || ||||| || | Sbjct 11277 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGA 11336 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| || ||||| || || ||||| | ||| || |||| | |||||| || | Sbjct 11337 AGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCG 11396 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || ||||| |||| ||| ||||| | | || || | ||||| || || Sbjct 11397 AGAAGAAGATGCCCTCCACGGTTGCGAACGCCAGCACGCGCTCCGGGTACGACGACACTC 11456 Query 17136 T-GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 | || | ||| || || |||| | ||||| | ||| | || ||||| || Sbjct 11457 GCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGAATCGTATCG 11515 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAG 17253 ||||| | | | || || ||| || | || | || ||||| || ||||| || Sbjct 11516 ATGGCACGCAGCAGGTGGTCCTTCTCC-GTCGCATCCTTGATGTACGTGTCAATGAGCAG 11574 Query 17254 GCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGC 17313 |||| || ||||| |||||||| ||||| ||||| || ||||| ||||| ||||| Sbjct 11575 CGAATACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGGC 11634 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCCG 17371 |||| | || ||||| | ||| |||| || || || ||||||||||||||| Sbjct 11635 CTCCGGCACCTGCACTTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCG 11692 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 ||||| || ||||| || |||| | ||||| ||||| Sbjct 11693 TCGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 11730 >seq7744 Length=2697 Score = 138 bits (152), Expect = 1e-27 Identities = 290/428 (68%), Gaps = 6/428 (1%) Strand=Plus/Minus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 |||||||| | |||||| || ||||| || || ||| || ||||| || || ||| Sbjct 1827 CCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTC 1768 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| || || | | |||||| || || ||||| || ||||| || | ||| ||| Sbjct 1767 TTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACAGCTGCGAAC 1708 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTT-GTTACGAATCCATTTCTGCACCCACTC 17163 || | | || || | ||||| || || | || | ||| || || |||| | Sbjct 1707 GCCAGCAGACGCTCCGGGTACGACGACACTCGCGGGTCGCA-CCACTTGAGCGCCCAGTG 1649 Query 17164 GGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTG 17223 ||||| | ||| | || ||||| || ||||| | | | || || ||| Sbjct 1648 CGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGT 1589 Query 17224 TAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCAT 17283 | || | || ||||| || ||||| || |||| || ||||| |||||||| || Sbjct 1588 TGCATCCTTGATGTACGTGTCAATGAGCAGCGAATACACCTCTGAGTGGATGTTCTCGAT 1529 Query 17284 GGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCG 17343 ||| ||||| || ||||| ||||| ||||| |||| | || ||||| | ||| | Sbjct 1528 GGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCCGGCACCTGCACTTCATTGCTGAA--G 1471 Query 17344 TTCC--GCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGC 17401 ||| || || || |||||||||||||||||||| || ||||| || |||| | ||| Sbjct 1470 TTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAAGGCCAGCACGTGC 1411 Query 17402 TTAATGAA 17409 || ||||| Sbjct 1410 TTGATGAA 1403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517484568435120