Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq584 138 1e-27 seq7744 132 5e-26 >seq584 Length=26749 Score = 138 bits (152), Expect = 1e-27 Identities = 312/459 (68%), Gaps = 10/459 (2%) Strand=Plus/Plus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || ||||||||||| || | || ||||| | |||||| || ||||| || | Sbjct 11277 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGA 11336 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| || || ||||| | |||||| |||| |||| || || ||| Sbjct 11337 AGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCG-AGCAGAACGAGCCC 11395 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CA-T 16370 || ||||| || ||||| || | ||| || || | | || |||| ||||| | || | Sbjct 11396 GAGAAGAAGATGCCCTCCACGGTTGCGAACGCCAGCACGCGCTCCGGGTACGACGACACT 11455 Query 16371 CTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTT 16430 | | || | ||| || | |||| | ||||| | || | ||| ||||| | Sbjct 11456 CGCGGGT-CGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGAATCGTAT 11513 Query 16431 CTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTA 16490 | ||||| | || | || || ||| ||| | || ||||| ||||| || | Sbjct 11514 CGATGGCACGCAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAGCA 11573 Query 16491 AACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAG 16550 |||| || ||||| |||||||| ||||| ||||| || || |||||||| || | Sbjct 11574 GCGAATACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGG 11633 Query 16551 CCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACC 16608 |||||| | || ||||| | || |||| ||||||||||| |||||||| || Sbjct 11634 CCTCCGGCACCTGCACTTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCC 11691 Query 16609 GTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 ||| || ||||| || || |||| | |||||| ||||| Sbjct 11692 GTCGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 11730 >seq7744 Length=2697 Score = 132 bits (146), Expect = 5e-26 Identities = 304/448 (68%), Gaps = 10/448 (2%) Strand=Plus/Minus Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCT 16264 |||||||| || | || ||||| | |||||| || ||||| || || | | || Sbjct 1845 GCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCA 1786 Query 16265 GGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGAATAT 16323 ||||| || || ||||| | |||||| || | |||| || || ||||| ||||| || Sbjct 1785 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAACGAGCCCGAGAAGAAGAT 1727 Query 16324 ACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CA-TCTTTATTACGA 16381 ||||| |||| ||| || || | | || |||| ||||| | || || | || Sbjct 1726 GCCCTCCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGACGACACTCGCGGGT-CGC 1668 Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441 | ||| || | |||| | ||||| | || | ||| ||||| || ||||| Sbjct 1667 A-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGC 1609 Query 16442 AACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATT 16501 | || | || || ||| ||| | || ||||| ||||| || | |||| Sbjct 1608 AGCAGGTGGTCCTTCTCCGTTGCATCCTTGATGTACGTGTCAATGAGCAGCGAATACACC 1549 Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561 |||||||| |||||||| ||||| ||||| || || |||||||| || ||||||| | Sbjct 1548 TCTGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCCGGCACC 1489 Query 16562 TGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACCGTCACTTGCAG 16619 || ||||| | || |||| ||||||||||| |||||||| ||||| || |||| Sbjct 1488 TGCACTTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAG 1431 Query 16620 CAAAAAACGCCAATATGTGCTTAATGAA 16647 | || || |||| | |||||| ||||| Sbjct 1430 CGAAGAAGGCCAGCACGTGCTTGATGAA 1403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511354091456880