Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq2043 86.0 5e-12 >seq2043 Length=11907 Score = 86.0 bits (94), Expect = 5e-12 Identities = 216/321 (67%), Gaps = 8/321 (2%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || ||||| || || | ||||||||||||||| | ||||||||||| | || | ||| Sbjct 5469 GGCGACCTCGGACCGGTCTACGGCTTCCAGTGGCGTCATTTTGGAGCAAAGTACACGGAC 5410 Query 18849 TGTCAATCAAACTATTTACAG--CAAGGAATCGATCAGCT-GCAAACTGTTATAGATACA 18905 || | |||| || | || || | || ||||| || | ||||| || | Sbjct 5409 ATGCACGCCGACTAC--ACTGGTCAGGGCGTGGACCAGCTCGCTGAG-GTTATTGACAAG 5353 Query 18906 ATTAAAACAAACCCAGAAAG-CCGACGAATGATTATATCGTCTTGGAATCCAAAGGATAT 18964 | ||||| || || | ||| || || | | ||| | |||||||| |||| | Sbjct 5352 CTGCGCACAAATCC-GACCGACCGTCGGATCGTGCTGTCGGCGTGGAATCCGGCGGATCT 5294 Query 18965 CCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGA 19024 | |||| || || || || |||| ||| || ||||| ||||| || |||| || Sbjct 5293 CAATGAGATGGCGCTCCCGCCGTGCCACATGTTCTGCCAGTTCTACGTGGCCGACGGCGA 5234 Query 19025 ATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACAT 19084 || |||||||| | |||||| | |||| || ||||| ||||| || ||||||||||| Sbjct 5233 GTTGTCCTGCCAGATGTACCAGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTCAACAT 5174 Query 19085 TGCTGGATATGCACTTCTTAC 19105 || | || || | ||||| Sbjct 5173 CGCCAGCTACGCGTTGCTTAC 5153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399458066278530