Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq2043 224 1e-53 >seq2043 Length=11907 Score = 224 bits (248), Expect = 1e-53 Identities = 484/712 (68%), Gaps = 19/712 (3%) Strand=Plus/Plus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||||| || ||||| || || ||||| || || || | ||||||| || || || Sbjct 5060 AGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGGACAAACTCGCCA 5119 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAG-GTCAGCAGGGAGTAGCTGGCTATGTT 145802 |||| || || | | || || | || || | || |||| | ||||||||| ||||| Sbjct 5120 GGCTTCAGTCCACTCACCTGTGCTATCA-GTCGCGTAAGCAACGCGTAGCTGGCGATGTT 5178 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC 145862 ||| ||||| || || |||||||| ||||||||||||||| ||||||||| | ||| || Sbjct 5179 GAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCGCC 5238 Query 145863 GCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 | | ||||||||||||||||| | | |||||| ||||| || ||||| | || || Sbjct 5239 GTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATC 5298 Query 145923 CGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTG-CTCTCGGGGTTCCTCTTGATCTCCC 145981 |||||| ||||| || | || |||| || | | | || || || | | || Sbjct 5299 CGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTC-GGATTTGTGCGCAGCTTGT 5357 Query 145982 CTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACG 146040 | || | || |||||||||||||||||| || ||| || | | || | |||| | Sbjct 5358 CAATAACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTAGTC-GGCGTGCATGTCCGTG 5416 Query 146041 TACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCC 146100 ||| || || || || | ||||||||| |||||||| || || ||||| || ||| Sbjct 5417 TACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCCAACTTCC 5476 Query 146101 CTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTG 146160 | | ||| || | | | || | ||||| || || ||| |||||||||| | | Sbjct 5477 CGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGATCCATTGCCGTCCCAGATGTGG 5536 Query 146161 ACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCT 146220 | || || | ||| | | |||| || ||||||||||| |||||||| Sbjct 5537 ATATCCTTCTCCTGCAGCGTGTGCGCACTCGTGTCGCCACTGATGAACCACAGCAGCTCC 5596 Query 146221 TCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGCCCCGC 146277 || || || | ||||||||| | |||||| || |||| ||||||| | ||||| | Sbjct 5597 TCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAAGGGGAACACGTTGCCCCTC 5656 Query 146278 AG---GGAGTACTTGGCCTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCC--TGT 146332 || | || | | ||| | |||||||| ||||| || || ||||| | | | Sbjct 5657 AGACTGAAGCGCAT---CTGCGCTCCGAAGACCGACAGCGTCCCTGTTCCCGTGCGATCT 5713 Query 146333 CCCCCCTGCGCACCCCGTTCGCCAGGATCTCCCTGACGGTGTTGAGGTACTG 146384 || | || || | || | | |||||||| || || || ||||||||| Sbjct 5714 CCGCGCTTCG--CTCCTTGGGTCAGGATCTTCCGGATCAAGTCGAGGTACTG 5763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590007215193360