Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq584 408 4e-109 seq7744 385 5e-102 seq1050 179 4e-40 seq93 154 2e-32 seq1009 131 2e-25 seq1059 107 2e-18 >seq584 Length=26749 Score = 408 bits (452), Expect = 4e-109 Identities = 593/829 (72%), Gaps = 14/829 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | ||| ||||||||| |||||||||| | ||||| || || | | ||| Sbjct 11898 GAGCCGTTCCTGGTCGAGAACCCGAACCGGTTCGTGCTGTTCCCGATCCAGGAGCACGAC 11839 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 |||||| |||||||| ||||| ||||| ||||||||||| | ||||||| |||||||| Sbjct 11838 GTGTGGCAGATGTACAAGAAGGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTG 11779 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 | | ||| || ||||||| | | ||| ||||||||||| |||||||||||| Sbjct 11778 GCGCACGACCTGAAGGACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCAC 11719 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 ||||||||||| ||||| ||||||||||||||||| |||||||| |||| | | ||| Sbjct 11718 GTGCTGGCCTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTC 11659 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 | || ||||||||| | ||||| || ||||||||||| || ||||||||||| ||| Sbjct 11658 AGCAATGAAGTGCAGGTGCCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCCATCGAG 11599 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAG 116935 ||| | |||||||| |||||||| ||||| ||||||||| | | || |||| Sbjct 11598 AACATCCACTCGGAGGTGTATTCGCTGCTCATTGACACGTACATCAAGGATGCGACGGAG 11539 Query 116936 AAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGG 116995 ||| || || || |||||||| ||||| ||||| || || |||| || | ||| Sbjct 11538 AAGGACCACCTGCTGCGTGCCATCGATACGATTCCGTGTGTGAAGAAGAAAGCGCACTGG 11479 Query 116996 GCGCTGCGCTGGATCG-CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGC 117054 ||||| ||| || || || ||| | | | | | |||||| || |||| ||||| Sbjct 11478 GCGCTCAAGTGGTGCGACCCGC-GAGTGTCGTCGTACCCGGAGCGCGTGCTGGCGTTCGC 11420 Query 117055 GGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACG 117114 |||| |||||| ||||||| |||||| ||| | | || || ||||||||||| || Sbjct 11419 AACCGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCGATCTTCTGGCTCAAGAAGCG 11360 Query 117115 CGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174 |||||||||||| ||||||| ||| |||||||| ||| | | |||||||| |||| Sbjct 11359 CGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGCATGCA 11300 Query 117175 TTGCGACTTTGCCTGTTTGCTG---TTCAAGCATTTGGTG---CAGCGACCGAGCGCGGC 117228 ||||| || || | || | ||||| ||||| ||| ||| | | | | Sbjct 11299 CACGGACTTCGCGTGCCTCATGTACTCCAAGC---TGGTGAACAAGCTGCCG-GAGAGCC 11244 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288 ||| | || |||||||| ||||||||| | |||||||| ||| | || | Sbjct 11243 GCGTG-CA-CGAGATCGTGCGCGACGCGGTGACGATCGAGCACGAGTTCGTGCGTGACTC 11186 Query 117289 GCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGT 117348 ||| || ||| ||| | || | || | | |||| ||||||||||||||||| Sbjct 11185 GCTCCCTGTGGAGCTGATCGGCATGAACTCGGGGCTCATGTGCCAATACATCGAGTTCGT 11126 Query 117349 CGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACG 117397 |||||| | |||||| | ||||| | | ||| ||||||| || Sbjct 11125 GGCCGACCGTCTGCTGTGCTCGCTGGGTGTGTCGAAGATCTACAACGCG 11077 >seq7744 Length=2697 Score = 385 bits (426), Expect = 5e-102 Identities = 447/600 (75%), Gaps = 2/600 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | ||| ||||||||| |||||||||| | ||||| || || | | ||| Sbjct 1235 GAGCCGTTCCTGGTCGAGAACCCGAACCGGTTCGTGCTGTTCCCGATCCAGGAGCACGAC 1294 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 |||||| |||||||| ||||| ||||| ||||||||||| | ||||||| |||||||| Sbjct 1295 GTGTGGCAGATGTACAAGAAGGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTG 1354 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 | | ||| || ||||||| | | ||| ||||||||||| |||||||||||| Sbjct 1355 GCGCACGACCTGAAGGACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCAC 1414 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 ||||||||||| ||||| ||||||||||||||||| |||||||| |||| | | ||| Sbjct 1415 GTGCTGGCCTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTC 1474 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 | || ||||||||| | ||||| || ||||||||||| || ||||||||||| ||| Sbjct 1475 AGCAATGAAGTGCAGGTGCCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCCATCGAG 1534 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAG 116935 ||| | ||||| || |||||||| ||||| ||||||||| | | | |||| Sbjct 1535 AACATCCACTCAGAGGTGTATTCGCTGCTCATTGACACGTACATCAAGGATGCAACGGAG 1594 Query 116936 AAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGG 116995 ||| || || || |||||||| ||||| ||||| || || |||| || | ||| Sbjct 1595 AAGGACCACCTGCTGCGTGCCATCGATACGATCCCGTGTGTGAAGAAGAAAGCGCACTGG 1654 Query 116996 GCGCTGCGCTGGATCG-CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGC 117054 ||||| ||| || || || ||| | | | | | ||||| ||| |||| ||||| Sbjct 1655 GCGCTCAAGTGGTGCGACCCGC-GAGTGTCGTCGTACCCGGAGCGTCTGCTGGCGTTCGC 1713 Query 117055 GGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACG 117114 || || |||||| ||||||| |||||| ||| | |||| || ||||||||||| || Sbjct 1714 AGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCG 1773 Query 117115 CGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174 |||||||||||| ||||||| ||| |||||||| ||| | | |||||||| |||| Sbjct 1774 CGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGCATGCA 1833 >seq1050 Length=18215 Score = 179 bits (198), Expect = 4e-40 Identities = 181/233 (78%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 || |||||| || ||||| || ||||| |||||||| |||||||| ||||||| || | Sbjct 4994 AACAATGCAGATTTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCC 5053 Query 40746 CACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | ||| | || |||| | ||| | || |||| ||||| ||||||||||| | | Sbjct 5054 GTCGGACTCGATTGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCG 5112 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| || ||||||| ||| ||||| |||||||| |||| ||||| || | ||||| Sbjct 5113 ACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACT 5172 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||||| | |||||||| || ||| |||| || | |||||| Sbjct 5173 ACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGGCTGCGTGGCGGC 5225 Score = 167 bits (184), Expect = 2e-36 Identities = 168/216 (78%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| |||||||| |||||||| ||||||| || | | Sbjct 5226 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 5285 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| ||||| ||||||||||| | ||||| Sbjct 5286 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCA 5344 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 5345 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 5404 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | |||||||| || ||| |||| Sbjct 5405 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCG 5440 >seq93 Length=57835 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| |||||||| || ||||| ||||||| || | | Sbjct 54632 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 54691 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| |||| || | ||||| ||||||||||| | ||||| Sbjct 54692 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 54750 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| ||||| || | ||||||||| Sbjct 54751 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAA 54810 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||||||| | |||||||| || ||| |||| || | || ||| Sbjct 54811 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGGC 54859 Score = 150 bits (166), Expect = 2e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| |||||||| || ||||| | ||||| || | | Sbjct 55316 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 55375 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| |||| || | ||||||||||||||||| | ||||| Sbjct 55376 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAAGAGGGCATCCCGCCTGACCA 55434 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| ||||| || | ||||||||| Sbjct 55435 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAA 55494 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||| ||||||||| | |||||||| || ||| ||||| Sbjct 55495 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGC 55531 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| |||||||| || ||||| | ||||| || | | Sbjct 54860 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 54919 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| |||| || | ||||||||||||||||| | ||||| Sbjct 54920 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAAGAGGGCATCCCGCCTGACCA 54978 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| ||||| || | ||||||||| Sbjct 54979 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAA 55038 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||||||| | |||||||| || ||| |||| || | || ||| Sbjct 55039 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGGC 55087 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| |||||||| || ||||| | ||||| || | | Sbjct 55088 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 55147 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| |||| || | ||||||||||||||||| | ||||| Sbjct 55148 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAAGAGGGCATCCCGCCTGACCA 55206 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| ||||| || | ||||||||| Sbjct 55207 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAA 55266 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||||||| | |||||||| || ||| |||| || | || ||| Sbjct 55267 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGGC 55315 >seq1009 Length=18926 Score = 131 bits (144), Expect = 2e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| | ||||| || | || Sbjct 8303 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 8244 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| ||||||||||| | |||||| Sbjct 8243 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 8184 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| || ||||||||| Sbjct 8183 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTATCGGACTACAAC 8124 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 8123 ATCCAGAAGG 8114 >seq1059 Length=18192 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 11422 GGAATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 11363 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| ||||||||| || ||| | || || | Sbjct 11362 ACCCTTTCGGACTACAACATCCAGAAGGAGAGCACGCTGCACCTGGTGCTTCGTCTGCGT 11303 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 11302 GGTGGTGGC 11294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515158442775840