Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1023 152 4e-32 seq93 143 2e-29 seq1050 134 1e-26 seq1009 98.7 9e-16 >seq1023 Length=18726 Score = 152 bits (168), Expect = 4e-32 Identities = 312/458 (68%), Gaps = 8/458 (2%) Strand=Plus/Plus Query 132917 GCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGA 132976 ||||| || |||||||| || || || |||| ||| ||||| ||||| || ||| Sbjct 2204 GCGCATGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCAT---CGA 2260 Query 132977 CACCACCGAG-TAA--GTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTAT 133033 | | | | | | || || ||||||| | || ||||| |||||||| || Sbjct 2261 CGTGAGCTTGCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAAT 2320 Query 133034 GAAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGT 133093 | | | | | |||||||| | || || | | ||| ||||||||||| |||| Sbjct 2321 GTACGCACCGCGGTCGGCCGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCCACACCGT 2380 Query 133094 CTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTC 133153 |||| | | |||||| || | || || | | | |||||||||||| ||| | || Sbjct 2381 CTTGTACTTCTCCTTGACGTGGTCCGGGATCGCCTTGACGTTCTGCACGGAGCCGCTGTC 2440 Query 133154 GGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGAC 133213 | ||| |||| |||||||| ||||| || | ||| |||| ||||| ||| | || | Sbjct 2441 GTTCAAGATCTGGTTGCGCACGTCCGGCGTCCAGATGCCGAGCTCGATCAGCTCCTTCAT 2500 Query 133214 GAGATACTGGTTGACCA-CTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCG 133272 || |||| |||||| | | || ||||| || || || || || | | || | || | Sbjct 2501 CAGGTACTTGTTGACGATCGTG-AACTCTCCAGCCAGCACTCGGCGGTTGTACATGTTGG 2559 Query 133273 ACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCA 133332 ||||| |||| |||| ||| |||||||| || || ||||| ||||| | ||||| |||| Sbjct 2560 ACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAAGCCGTCGGCA 2619 Query 133333 TGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTG 133370 || ||||||| || ||||| | | |||| |||| Sbjct 2620 TGGGGGCCACCAGCAGCGAGTTGCGGAGTCCGTGCTTG 2657 >seq93 Length=57835 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||||| ||| | || ||||| || ||||||||||| |||||| Sbjct 54858 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 54799 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || |||||| |||| ||||||||||| || || || Sbjct 54798 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 54739 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || ||||| || || | |||| | ||||| ||| || Sbjct 54738 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 54679 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || | ||| ||||| ||||| || || || || |||||||| Sbjct 54678 TCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 54632 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||||| ||| | || ||||| || ||||||||||| |||||| Sbjct 55086 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 55027 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || |||||| |||| ||||||||||| || || || Sbjct 55026 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 54967 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||| ||||| || ||||| || || | |||| | ||||| ||| || Sbjct 54966 ATGCCCTCTTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 54907 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | ||| ||||| ||||| || || ||||| ||||||||| Sbjct 54906 TCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 54859 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||||| ||| | || ||||| || ||||||||||| |||||| Sbjct 55314 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 55255 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || |||||| |||| ||||||||||| || || || Sbjct 55254 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 55195 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||| ||||| || ||||| || || | |||| | ||||| ||| || Sbjct 55194 ATGCCCTCTTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 55135 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | ||| ||||| ||||| || || ||||| ||||||||| Sbjct 55134 TCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 55087 Score = 138 bits (152), Expect = 1e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || ||||||||||| ||||||| ||||| || Sbjct 55528 CAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTC 55469 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || |||||| |||| ||||||||||| || || || |||||||| ||||| Sbjct 55468 CTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCTTTGTC 55409 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || ||||| || || | |||| | ||||| ||| || || | || | ||| Sbjct 55408 CTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGT 55349 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || ||||| ||||||||| Sbjct 55348 CTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 55315 >seq1050 Length=18215 Score = 134 bits (148), Expect = 1e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || || |||||||| ||||||| ||||| || Sbjct 5438 CAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 5379 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || ||| ||||||| |||||||| ||||| || |||||||||||||| Sbjct 5378 CTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 5319 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || || | |||| | ||||| ||| || |||| || | || Sbjct 5318 CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGT 5259 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || || || ||||||||| Sbjct 5258 CTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 5225 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || || |||||||| ||||||| ||||| || Sbjct 5210 CAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 5151 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || ||| ||||||| |||||||| ||||| || |||||||||||||| Sbjct 5150 CTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 5091 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || || | || | | ||||| ||| || |||| || | || Sbjct 5090 CTGAATCTTCTGCTTCACGTTGTCAATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGT 5031 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || || ||||||||||| Sbjct 5030 CTTGCCCGTCAGCGTCTTGACGAAAATCTGCAT 4998 >seq1009 Length=18926 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || | ||||| ||||||||||| || |||||| |||| Sbjct 8116 TTCTGGATGTTGTAGTCCGATAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 8175 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || |||||||||||||| ||||| || || || | || Sbjct 8176 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 8235 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 8236 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 8295 Query 118731 ATCTGCATG 118739 ||||||||| Sbjct 8296 ATCTGCATG 8304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433780519536328