Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1023 179 8e-40 seq96 120 7e-22 seq7744 98.7 2e-15 seq2029 91.5 3e-13 seq584 84.2 5e-11 >seq1023 Length=18726 Score = 179 bits (198), Expect = 8e-40 Identities = 858/1355 (63%), Gaps = 63/1355 (5%) Strand=Plus/Minus Query 248419 ATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCG 248478 |||||| ||| |||||| |||||||| | || |||| |||||||| || ||||| Sbjct 4423 ATGTACGTCATCAAGCGCGACGGGCGTCAGGAGGACGTCAAGTTCGACAAGATTACGGCG 4364 Query 248479 CGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGAT--CATGTGGCCATCG 248536 ||||||| |||||||| || || || | || ||| ||| || ||| | ||| Sbjct 4363 CGCATCACCAAGCTCTGCTACGGGCTCAACCCGGACTACGTGGACGCCATCAAG--ATCT 4306 Query 248537 CCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAG 248596 ||||||| || | ||||||| ||| |||| ||||| || | ||| | ||| | | Sbjct 4305 CCCAGAAGGTCGTGGCGGGCGTGTACCCCGGCGTAACCACCTCGGAATTAGACGAACTCG 4246 Query 248597 CTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGA 248656 | || ||||| || || | | | | | ||||| || | ||| ||||| | | Sbjct 4245 CGGCCGAGACCGCCGCCTGCCAGAGCACTCAGCACCCGGATTTCTCTAAACTGGCGGCAA 4186 Query 248657 GGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGGCTG 248716 | ||||||||||| | || ||||| | || || || ||| ||| | ||| | | Sbjct 4185 GAATCGCCGTCTCTAACCTGCACAAGAACACCAACAAGGTGTTTAGCGACAACATCGAGG 4126 Query 248717 --------------ACCTACATGCCTATGGG-----ATGG--------TCGCCGATGACG 248749 ||| || | | ||| ||| |||| ||||||| Sbjct 4125 TTTTTCACAAGAACACCCACGAGAAGACGGGTGCAGATGCGCCCCTCATCGCTGATGACG 4066 Query 248750 TCCAC---ACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCA 248806 | || | |||||| ||| |||| | || ||| || || || | ||| | Sbjct 4065 TATACGAGATCGTCATGCAGCACAAGG---ACGAGCTGAACTCGGCCATCATCCACGACC 4009 Query 248807 AAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAA 248866 || || || ||||| | ||||| || ||||| || ||| ||| ||| || Sbjct 4008 GGGACTTTGATTACGACTACTTTGGGTTTAAAACTCTCGAGCGCGGGTACCTCTTCCGCG 3949 Query 248867 TTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTC 248926 | | ||||| | ||||| || ||||| ||| | ||||| ||||| | || || | Sbjct 3948 TAAACGGCAAAGTGGTGGAGCGTCCGCAGCAAATGATTATGCGCGTGGCACTTGGCATCC 3889 Query 248927 ACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGA 248986 ||||| |||| | | || || ||||||||| ||| || | | | Sbjct 3888 ACAAGAGCAACATTGCGGCCGCCCTGGAGACGTACGAGCTCATGTCGCAAATGTTTTTCA 3829 Query 248987 CACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGCTCG 249042 | |||||||| ||||| || || |||||||| || || | |||| ||| || Sbjct 3828 CGCATGCCACCCCGACACTTTTTAACGCCGGCACGCCGCGCCCACAA----CTGTCGTCT 3773 Query 249043 TGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAG 249102 ||||| || | ||||||||||||||||| | || |||||||| |||||| | || || Sbjct 3772 TGCTTCCTATTGGCCATGCAAGACGACTCAATTGAAGGCATTTACGACACGTTAAAGCAA 3713 Query 249103 ACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCG 249162 || || ||||||| || || || || || || | |||||||||||| Sbjct 3712 TGTGCCTGTATCTCTAAATGGGCCGGAGGTATTGGCATCAGTATGCACAACATCCGAGCC 3653 Query 249163 AAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTG--ATGGTATCGTACCCCTCCTTC 249220 | |||||| ||| || || || || || |||| ||| | ||| | || | Sbjct 3652 ACCAACAGCTACATCCGAGGCACGAACGGC-TC-GTCCAATGGCATCATCCCCATGCTGC 3595 Query 249221 GATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGT 249277 | ||| | |||||| ||| | | |||||| ||| || || ||||| || | Sbjct 3594 GGGTGTTTAACGACACCGCGCGGTACGTGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCT 3535 Query 249278 TCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGA 249337 ||||||| |||||||| |||||||| ||| | || |||||| ||||| | |||| Sbjct 3534 TCGCCATCTATTTGGAGCCTTGGCACGCAGATGTGTTCGAGTTCTTGGACCTCCGTAAGA 3475 Query 249338 ACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACT 249397 || ||||||||||| | | || || ||||| ||||||| ||| ||||| | || Sbjct 3474 ACCACGGCAACGAGTTGCACCGCGCTCGCGACCTGTTCTACGCCCTTTGGGTGCCTGATC 3415 Query 249398 TGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCC 249457 |||||||| | || | ||| | ||| | |||| || ||| || ||| |||| Sbjct 3414 TGTTCATGAAGAGGGTGGAAGCCAATGGCAAGTGGAGTCTCTTTTGCCCTAACGAGGCCC 3355 Query 249458 CGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATAAGAAATACGAATCCA 249517 | | ||| || |||| ||| ||||| |||| | || ||||| | Sbjct 3354 CTGGACTCTATGAGTGCTGGGGCGACGAATTCGAGGCCCTCTATGAAAAGTACGAGACGG 3295 Query 249518 ACG---GCATCGGCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGT 249571 | | || | ||||||| ||||| || | | || || || | | |||| Sbjct 3294 AGGGACGCGCCCGCAAGACGATCAACGCCCAGCAGCTGTGGTTCGCCA---TATTGGACG 3238 Query 249572 CCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGT 249630 ||||||| ||||| || | ||| | |||| |||| ||| |||||| |||| |||| Sbjct 3237 CCCAGATCGAGACGGGAGTGCCCT-TTATGTTGTACAAGGACGCGGCCAACCGCAAGTCG 3179 Query 249631 AACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATAC 249690 ||||| | | | || || || |||||||| || | || |||||||| | ||| Sbjct 3178 AACCAGCAGAACCTCGGCACGATCCGCTCCAGCAACTTATGCTGTGAGGTGATGGAGTAC 3119 Query 249691 TCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||| || ||| | || || |||||| |||| Sbjct 3118 ACGTCGCCAGACGAGGTGGCTGTGTGCAACTTGGC 3084 >seq96 Length=53704 Score = 120 bits (132), Expect = 7e-22 Identities = 268/396 (68%), Gaps = 11/396 (3%) Strand=Plus/Minus Query 253994 TGGCGACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCAT 254053 |||| | || || || ||| | ||| |||| ||||| || || ||||||||||| ||||| Sbjct 42537 TGGCCAGCTGCCCCACTTGTTGTTCTACGGACCTCCAGGCACGGGCAAGACGTCCACCAT 42478 Query 254054 CCTGGCGCTGGCCCGAACCCTGTTGGGCGAGGGGAAC---ATGAGAGAGCGCGTGCTCGA 254110 ||||| ||| || || || || || | | || | ||| | | || Sbjct 42477 TGTGGCGGTGGGGCGCCAGCTCTTCGGTCCGGACTTCCGCAAGAATGGCCGCTTCTTGGA 42418 Query 254111 GCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTC 254170 ||||||||| || || || || || | | || || ||||| ||| |||| | ||| | Sbjct 42417 GCTGAACGCATCGGATGACCGAGGCATTAAGGTGGTGCGCGAGAAGGTCAAAAGCTTCGC 42358 Query 254171 CAAGATGTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGA 254230 | || | || | | ||| | ||| ||||| || ||| || | | || || Sbjct 42357 CCAGGGTGCCATCAGCACCT-CCAGC--GGCCTCCCGCCCTTTAAGATCATTGTGCTCGA 42301 Query 254231 CGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCA 254290 ||||| ||| ||||||||| |||||| ||||| || || || || | |||||||| | Sbjct 42300 TGAGGCCGACTCCATGACGGGCGACGCACAGTCGGCTCTGCGTCGTATGATGGAGAACTA 42241 Query 254291 CTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTG--TCGAAGATCATCGCCCCG 254348 |||| || ||||| || ||||| | || ||||| ||| ||| | |||| | || Sbjct 42240 CTCCAAGGTCACGCGCTTCTGCCTCATCTGTAACTATGTGAGTCGCA--TCATTGAGCCT 42183 Query 254349 CTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGCACC 254384 ||||||| || ||||||||||| || ||| ||||| Sbjct 42182 GTGGCTTCCCGATGCGCCAAGTTCCGTTTC-GCACC 42148 >seq7744 Length=2697 Score = 98.7 bits (108), Expect = 2e-15 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| ||| ||||||| |||| | ||||| |||||||||||||| ||||| || Sbjct 2276 ACACCGGCCTTCGAGTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGC 2217 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTT-GTCGTACCCCAG 157362 || |||||||||||||| ||||| ||||| |||||| | ||| | | | ||||| Sbjct 2216 GAGATCATGTCCATCCAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACA-CCCAG 2158 Query 157363 CTGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACT 157400 | || |||| ||| ||||| |||| |||||||| Sbjct 2157 CGAGTACAGCAGACGGTCGGCCACGAACTCGATGTACT 2120 >seq2029 Length=11293 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 115402 ATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATG 115461 || || || | |||||| || ||||| ||||| ||||| |||||||||||| | | | Sbjct 6790 ATGGCGCAGCGGCTCTGGATGGGTTCAATGATCTTGGTCGAGTTGTTGCAGGCCAGCGCG 6731 Query 115462 AACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGT 115521 || ||||| ||| |||| | | |||||| | || ||||||||||| || | | Sbjct 6730 AAGCGCGTGGTGGCCGAGAAGATCTCCATGGTGCGGCGCAGCGCCTGCTGGGCCGCGGAC 6671 Query 115522 GTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 ||||| ||||| |||||||| || | || ||||| Sbjct 6670 GTCATGGAGTCGGCCTCGTCCAGGATCACGATCTT 6636 >seq584 Length=26749 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 157247 CCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAA 157306 |||| ||| ||||||| |||| | ||||| |||||||||||||| |||| || || Sbjct 6561 CCGGCATTGGAGTACTCGCCCACGCGTTTCTCGAAAAAGTTGGTCTTGCCCTACAGCGAG 6620 Query 157307 ATCATGTCCATCCACTCGAATGGGTT 157332 |||||||||||||| ||||| ||||| Sbjct 6621 ATCATGTCCATCCAATCGAACGGGTT 6646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073636610499712