Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1023 343 1e-89 seq93 152 5e-32 seq1050 145 7e-30 seq1009 127 2e-24 >seq1023 Length=18726 Score = 343 bits (380), Expect = 1e-89 Identities = 1225/1893 (65%), Gaps = 41/1893 (2%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 ||||||||| || |||| ||||||| || ||| ||| | || |||||||| Sbjct 2162 CTTGTCCACGGTGAACTTGATGGCGTCGGCTTTCGGGCGTCCGCGCATGTAGTACATGCC 2221 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 ||||| || ||| ||||||| ||||| || || |||||||| | || | |||| Sbjct 2222 GGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTTGCTGATGGTCGG 2281 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | | |||| | |||| |||||||||||| || |||| || || ||||| | Sbjct 2282 GTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTACGCACCGCGGTCGGCCGA 2341 Query 22285 CATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 || | | || | | | || ||||| || ||||||||| | | ||| | Sbjct 2342 CAGGTCCAGCACCGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTGACGTG 2401 Query 22345 TAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAAT 22404 ||| |||| | || |||| ||||| ||| | | || | |||| || | Sbjct 2402 GTCCGGGATCGCCTTGACGTTCTGCACGGAGCCGCTGTCGTTCAAGATCTGGTTGCGCA- 2460 Query 22405 CGTATCGT-TCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA-CT 22462 ||| | |||| | |||| || ||| || || | ||| | ||| || | | Sbjct 2461 CGTCCGGCGTCCAGATGCCGAGCTCGATCAGCTCCTTCATCAGGTACTTGTTGACGATCG 2520 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 |||| ||| || | || || ||||| | ||| |||||||| ||| |||| |||| ||| Sbjct 2521 TGAA-CTCTCCAGCCAGCACTCGGCGGTTGTACATGTTGGACGTGTACGGCTCGATAGAC 2579 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || |||||||| || ||||| || || ||||| |||||||| || |||| ||| |||||| Sbjct 2580 TCGTTGTTTCCAAGGATCTGGGCCGTGGAAGCCGTCGGCATGGGGGCCACCAGCAGCGAG 2639 Query 22583 TTTCTCAAGCCGTGCTTTGAAATTTTACTC-TTGAGCATCGACCAGTCCCACAGATCGGA 22641 || | | |||||||| || | ||| |||||| | | ||||| ||||| | | || Sbjct 2640 TTGCGGAGTCCGTGCTT-GATCACGTCCTCCTTGAGCGTAGCCCAGTTCCACATACCCGA 2698 Query 22642 CGGCG---TCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCC 22698 || || | || | ||||||| ||| | || || | ||| || || || ||| Sbjct 2699 CGACGGGGTGAC---GCCCCACATGTCGAACTGGAAGATGCCCTTGCTAGCGGGCGAGCC 2755 Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACGCGC 22757 | | |||| |||||||| || | | ||| | || || | || ||||| ||| Sbjct 2756 CTGGAACGTCTCGTACGGGCCGAGTTCCTTGGCGATCTC-CATCGACGTCTCCATGGCGG 2814 Query 22758 CGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACG 22817 || | || || ||||||||||| |||||||| | || ||| |||| ||| ||| Sbjct 2815 CGAAGTAGATGGTCTCGAAGATGTTCTTGTTGAGCTCCCGGGCCTTCTCGCTCTCGAACG 2874 Query 22818 GCATACG-CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGG 22876 | || ||| | | ||||||||||| | ||||| ||||| |||||||| || ||| Sbjct 2875 -CGTAGTTCATGAGGATAAACGCGTCCGCGAGGCCCTGGACGCCAATACCGATGGGGCGG 2933 Query 22877 TTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTG 22936 | || || ||| |||||| || || || | || ||||| || Sbjct 2934 TGACGCATGTTGGACTTGCGCGCCTCGATCACGGGGTAGTAGTTGACGTCGATGACCTTG 2993 Query 22937 TTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCC 22996 || ||||| | ||| || | ||||| | | ||| | |||| || Sbjct 2994 TTTAAGTTGCGGGTGACCACCTTCGTCACTTCATACAACTTCTGGTAGTTGAAAACTCC- 3052 Query 22997 GATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCT 23056 || | || ||||| | || | || || | ||||| || |||||||||||| Sbjct 3053 --TTCCTCCACGAACTTAGGCAGCGCCACAGACGCCAAGTTGCACACAGCCACCTCGTCT 3110 Query 23057 TTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTG 23116 ||||||||||| | | || |||| ||||| | |||||||| | || Sbjct 3111 GGCGACGTGTACTCCATCACCTCACAGCATAAGTTGCTGGAGCGGATCGTGCCGAGGTTC 3170 Query 23117 CTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCG 23176 |||||| || || ||| || |||||||| | ||| | ||| ||||||||| Sbjct 3171 TGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCG 3230 Query 23177 ACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT-GAACACGTCGCACGTACCT 23235 | ||| | || | || || ||||| ||| |||| || | | || | | | Sbjct 3231 ATCTGGGCGTCCAATATGGCGAACCACAGCTGCTGGGCGTTGATCGTCTTGCGGGCGCGT 3290 Query 23236 GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAG 23295 ||| | || |||||||||| || | || || |||||| | || | || || || Sbjct 3291 CCCTCCGTC-TCGTACTTTTCATAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAG 3349 Query 23296 GCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT---TTCAACGCGTCT 23352 || || | | | || || | |||||||||| | | |||| ||| || | | Sbjct 3350 TCCAGGGGCCTCGTTAGGGCAAAAGAGACTCCACTT---GCCATTGGCTTCCACCCTCTT 3406 Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 ||| || ||||| || | ||| || ||||||||||| ||||| ||||| | ||| || Sbjct 3407 CATGAACAGATCAGGCACCCAAAGGGCGTAGAACAGGTCGCGAGCGCGGTGCAACTCGTT 3466 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 |||| |||||| | ||||| || || ||||| || || ||||| ||||| | || Sbjct 3467 GCCGTGGTTCTTACGGAGGTCCAAGAACTCGAACACATCTGCGTGCCAAGGCTCCAAATA 3526 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTT 23532 | ||| || | |||| | ||| |||||||| || ||||| || || |||| ||| Sbjct 3527 GATGGCGAAGGAGCCCTTACGCTTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTT 3586 Query 23533 GTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGA 23592 |||| | ||||| || | || || ||||||| |||| | || ||| | | Sbjct 3587 AAACACCCGCAGCATGGGGATGATGCCATTGGACGAGCCG--TTCG--TGCCTCGGATGT 3642 Query 23593 ACCTTTT----GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATA 23648 | || || ||||| | |||||| | || || || |||||| || |||| || | Sbjct 3643 AGCTGTTGGTGGCTCGGATGTTGTGCATACTGATGCCAATACCTCCGGCCCATTTAGAGA 3702 Query 23649 TCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGA 23708 | || ||||| || | |||||||| ||||| || || ||| |||| | || | Sbjct 3703 TACAGGCACATTGCTTTAACGTGTCGTAAATGCCTTCAATTGAGTCGTCTTGCATGGCCA 3762 Query 23709 CCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGG 23768 | ||| || || |||| ||| | ||||| |||| || ||||||||| ||| Sbjct 3763 ATAGGAAGCAAGACGACAGTTGTGGGCGCGGCGTGCCGGCGTTAAAAAGTGTCGGGGTGG 3822 Query 23769 CGTGCGTAAAGTATCCATT--CGACATTAGATTGTACGTGTCGATGGCGGCATCAATG-T 23825 | ||||| || | |||| |||||| || | |||||| || | |||||| ||||| | Sbjct 3823 CATGCGTGAA--AAACATTTGCGACATGAGCTCGTACGTCTCCAGGGCGGCCGCAATGTT 3880 Query 23826 CCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGA 23885 |||| ||| || || | || |||||||| ||||| | || || | ||| ||| Sbjct 3881 GCTCT-TGTGGATGCCAAGTGCCACGCGCATAATCATTTGCTGCGGACGCTCCACCACTT 3939 Query 23886 CGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGT 23945 |||||| | ||| || || || | | |||||||| ||||| ||||| || | Sbjct 3940 TGCCGTTTACGCGGAAGAGGTACCCGCGCTCGAGAGTTTTAAACCCAAAGTAGTCGTAAT 3999 Query 23946 TAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 |||||| || ||||| | |||||||| |||| Sbjct 4000 CAAAGTCCCGGTCGTGGATGATGGCCGAGTTCA 4032 >seq93 Length=57835 Score = 152 bits (168), Expect = 5e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| |||||||| ||||||| || ||||| Sbjct 54632 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 54691 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| || | || ||||||||| ||| | ||||| |||||| Sbjct 54692 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 54751 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||| ||| | || ||| | || ||||||| || ||| Sbjct 54752 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 54811 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || ||||| || || ||||| || Sbjct 54812 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCT 54843 Score = 141 bits (156), Expect = 8e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| |||||||| | ||||| || ||||| Sbjct 54859 CATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTC 54918 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| |||| | ||||| || | || |||||| || ||| | ||||| ||||| Sbjct 54919 GGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAAGAGGGCATCCCGCCTGACCA 54978 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||| ||| | || ||| | || ||||||| || || Sbjct 54979 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAA 55038 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || || ||||| || || ||||| || Sbjct 55039 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCT 55071 Score = 141 bits (156), Expect = 8e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| |||||||| | ||||| || ||||| Sbjct 55087 CATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTC 55146 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| |||| | ||||| || | || |||||| || ||| | ||||| ||||| Sbjct 55147 GGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAAGAGGGCATCCCGCCTGACCA 55206 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||| ||| | || ||| | || ||||||| || || Sbjct 55207 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAA 55266 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || || ||||| || || ||||| || Sbjct 55267 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCT 55299 Score = 141 bits (156), Expect = 8e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| |||||||| | ||||| || ||||| Sbjct 55315 CATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTC 55374 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| |||| | ||||| || | || |||||| || ||| | ||||| ||||| Sbjct 55375 GGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAAGAGGGCATCCCGCCTGACCA 55434 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||| ||| | || ||| | || ||||||| || || Sbjct 55435 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAA 55494 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || || ||||| || || ||||| || Sbjct 55495 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCT 55527 >seq1050 Length=18215 Score = 145 bits (160), Expect = 7e-30 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 || ||| ||||| |||||||| ||||| ||||| ||||| || ||||| ||||||| | Sbjct 4990 AAGCAACAATGCAGATTTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGG 5049 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 | ||||| ||| | || | || || |||| || ||||||||| ||| | |||| Sbjct 5050 AGCCGTCGGACTCGATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGC 5109 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 ||||||||||||| || || ||||| ||||| ||| |||| ||| || |||||| Sbjct 5110 CCGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCG 5169 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | || ||||| || || || ||||| || || ||||| || | ||| | ||||| Sbjct 5170 ACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGGCTGCGTGGCGG 5224 Score = 141 bits (156), Expect = 8e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || ||||| ||||||| || ||||| Sbjct 5225 CATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTC 5284 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| |||| | || || |||| || ||||||||| ||| | ||||||||||| Sbjct 5285 GGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCA 5344 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||| ||||| ||| |||| ||| || ||||||| || || Sbjct 5345 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 5404 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| || || ||||| || Sbjct 5405 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCT 5437 >seq1009 Length=18926 Score = 127 bits (140), Expect = 2e-24 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| ||||| ||||| || ||||| | ||||| || || Sbjct 8307 AATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCC 8248 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||||| | || | ||||| |||| ||| ||||||||| ||| | ||||| || Sbjct 8247 GTCCGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGA 8188 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| || || ||||||||||| ||| | || ||| Sbjct 8187 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGAC 8148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445713832997280