Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2043 127 4e-24 >seq2043 Length=11907 Score = 127 bits (140), Expect = 4e-24 Identities = 450/687 (66%), Gaps = 16/687 (2%) Strand=Plus/Minus Query 35137 AGGAGTGAAGAAGGACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAAT 35196 ||||| |||| | ||| | || |||||||| || || || | || ||| | || || Sbjct 5728 AGGAGCGAAGCGCGGAGATCGCACGGGAACAGGGACGCTGTCGGTCTTCGGAGCGCAGAT 5669 Query 35197 GAGGTTCTCTCTTCGAGACGACACTATTCCAGTT-CTCACTACCAAGAAAATTTTCTGGA 35255 | | ||| ||| | | | || | |||| || ||||| |||||| | |||||| Sbjct 5668 GCGCTTCAGTCTGAGGGGCAACG-TGTTCCCCTTGCTCACGACCAAGCGCGTCTTCTGGC 5610 Query 35256 GAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATAC-AGA-CGCCAAAGAATT 35313 | || || | ||| || || |||||||||||| ||| | || || ||| | | | Sbjct 5609 GCGGCGTGGCGGAGGAGCTGCTGTGGTTCATCAGTGGCGACACGAGTGCGCACACGC--T 5552 Query 35314 GGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAG 35373 | ||||| | || ||||||||| ||| ||||| |||||||| | | |||||||| | Sbjct 5551 GCAGGAGAAGGATATCCACATCTGGGACGGCAATGGATCGCGGGAGTATCTGGACAGTCG 5492 Query 35374 AGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCA 35433 ||| | | | | || || || | ||||| || ||||| ||||| |||||||| Sbjct 5491 AGGACTGCAGTCGCGGGAAGTTGGCGACCTCGGACCGGTCTACGGCTTCCAGTGGCGTCA 5432 Query 35434 TTTTGGTGCTGAATA-TGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAAT 35492 |||||| || | || || || | |||| || ||||| |||| | || || Sbjct 5431 TTTTGGAGCAAAGTACACGGACATGCAC-GCCGACTACACTGGTCAGGGCGTGGACCAGC 5373 Query 35493 TGGCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGG 35552 | || | | | | | ||| | |||||| || | |||| | || ||| Sbjct 5372 TCGCTGAGGTTATTGACAAGCTGCGCACAAATCCGACCGACCGTCGGATCGTGCTGTCGG 5313 Query 35553 CATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATG-ACTGCTCAA 35611 | |||||||| |||||| | ||||| || || || ||||||||| |||| || Sbjct 5312 CGTGGAATCCGGCGGATCTCAATGAGATGGCGCTCCCGCCGTGCCACATGTTCTGC-CAG 5254 Query 35612 TTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCG 35669 || || ||||| | || || ||||| |||||| |||| ||||| || || ||| | Sbjct 5253 TTCTACGTGGCCGACGGCGAGTTGTCCTGCCAGATGTACCAGCGCTCGGCCGACATG--G 5196 Query 35670 GGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGC-CAGT 35728 | | |||||||| ||||| || || ||| | | || || | ||||| || ||| Sbjct 5195 GACTTGGCGTGCCGTTCAACATCGCCAGCTACGCGTTGCTTACGCGACTGATAGCACAG- 5137 Query 35729 ATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAAT 35788 || || || || || || |||||| ||| | | ||||||| || ||| | ||| | Sbjct 5136 GTGAGTGGACTGAAGCCTGGCGAGTTTGTCCACGTTATTGGTGATGCCCACGTGTATCTT 5077 Query 35789 ACCCACATTGAGGTGTTAAAGAAGCAG 35815 | ||| | ||| | | |||||||| Sbjct 5076 AACCATGTCGAGCCGCTCCAGAAGCAG 5050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989464385889470