Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1023 86.0 8e-12 >seq1023 Length=18726 Score = 86.0 bits (94), Expect = 8e-12 Identities = 404/640 (63%), Gaps = 4/640 (1%) Strand=Plus/Plus Query 63273 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCG 63332 ||||| || |||||||| | |||||| || || || || | | | || |||| Sbjct 3405 TTCATGAACAGATCAGGCACCCAAAGGGCGTAGAACAGGTCGCGAGCGCGGTGCAACTCG 3464 Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 || || ||||| || || | |||| | | | ||| | ||||| || ||||| Sbjct 3465 TTGCCGTGGTTCTTACGGAGGTCCAAGAACTCGAACACATCTGCGTGCCAAGGCTCCAAA 3524 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 || ||||| | || || ||| ||| ||||| || | ||| | ||||||| Sbjct 3525 TAGATGGCGAAGGAGCCCTTACGCTTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGTCG 3584 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512 ||| | || | || ||| || || || || || || || || || || ||| ||| Sbjct 3585 TTAAACACCCGCAGCATGGGGATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGTAG 3644 Query 63513 CCTCCACTGGCACGAATATTACTAAT--TGATAGACCTATTCCCCCTGCCATTTTAGAGA 63570 | |||| || || || || |||| || || || || ||| |||||||| Sbjct 3645 CTGTTGGTGGCTCGGATGTTGTGCATACTGATG--CCAATACCTCCGGCCCATTTAGAGA 3702 Query 63571 TTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAA 63630 | | || ||| | ||||||||||| || |||||||| || || || |||| | Sbjct 3703 TACAGGCACATTGCTTTAACGTGTCGTAAATGCCTTCAATTGAGTCGTCTTGCATGGCCA 3762 Query 63631 GTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63690 ||| || || |||| ||| | || | || || || ||||| | || || | | Sbjct 3763 ATAGGAAGCAAGACGACAGTTGTGGGCGCGGCGTGCCGGCGTTAAAAAGTGTCGGGGTGG 3822 Query 63691 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 63750 | ||||| || | ||| || | || | ||||||||| | || | | || | | Sbjct 3823 CATGCGTGAAAAACATTTGCGACATGAGCTCGTACGTCTCCAGGGCGGCCGCAATGTTGC 3882 Query 63751 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGT 63810 | || || || | ||| || ||||| | ||| ||||| || | || || | |||| Sbjct 3883 TCTTGTGGATGCCAAGTGCCACGCGCATAATCATTTGCTGCGGACGCTCCACCACTTTGC 3942 Query 63811 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63870 ||||| || | ||| || | ||||||||| ||||| |||| ||| || Sbjct 3943 CGTTTACGCGGAAGAGGTACCCGCGCTCGAGAGTTTTAAACCCAAAGTAGTCGTAATCAA 4002 Query 63871 AGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 |||| || |||| || || |||| || |||| ||||| Sbjct 4003 AGTCCCGGTCGTGGATGATGGCCGAGTTCAGCTCGTCCTT 4042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629743328759520