Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq2043 205 8e-48 >seq2043 Length=11907 Score = 205 bits (226), Expect = 8e-48 Identities = 297/419 (71%), Gaps = 18/419 (4%) Strand=Plus/Plus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 || || || || ||||| || |||||||| ||||| | ||| ||||| || || Sbjct 5060 AGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGGACAAACTCGCCA 5119 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 || |||| || | || || || ||||| ||| || | ||||||||||||||||| Sbjct 5120 GGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAGCTGGCGATGTTG 5179 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104 ||||| || || || ||||||||||| || | |||||||| ||||||||||| ||| || Sbjct 5180 AACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCGCCG 5239 Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCC 21164 |||||||| ||||| || || | ||| || || ||||| |||||| ||| ||| Sbjct 5240 TCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATCC 5299 Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGATCG--------TG-GGGCCGCCTGTTA 21215 || || |||||||| ||| ||||| || || ||| || | || || ||| | Sbjct 5300 GCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATTTGTGCGCAGCTTGTCA 5359 Query 21216 ATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCC 21275 || | || | || ||||||||||| |||||||| ||||| ||||| Sbjct 5360 AT---AACCTCAGCG------AGCTGGTCCACGCCCTGACCAGTGTAGTCGGCGTGCATG 5410 Query 21276 CCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 || |||||| || |||||||| | ||||||||| ||||| ||||| || || ||||| Sbjct 5411 TCCGTGTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCC 5469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427726815652320