Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7744 172 8e-38 seq584 163 4e-35 seq1023 122 1e-22 seq2043 118 2e-21 seq1651 116 5e-21 >seq7744 Length=2697 Score = 172 bits (190), Expect = 8e-38 Identities = 397/587 (68%), Gaps = 21/587 (4%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| | | || ||| | ||| | |||||||| ||||| ||||||| || Sbjct 1271 CTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCTCGTTC 1330 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| ||| | || ||| | | |||||| | || |||| || | |||| Sbjct 1331 TGGACGGCCGAGGAGCTGGACCTGGCGCACGACCTGAAGGACTGGGCGAACC---TGACG 1387 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | ||||| || || |||| | |||||||||| || | | ||| || ||| Sbjct 1388 GACAACGAGCGGTTCTTCATCAAGCACGTGCTGGCCTTCTTCGCTGCCAGCGACGGCATC 1447 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTCGT 125232 || ||||| || ||| | || || || ||| || || | || |||| | Sbjct 1448 GTGAACGAGAACCTG--GCCATGAACTTCAGCAATGAAGTGCAGGTGCCGGAGGCCCGCT 1505 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 |||| ||||| ||||| ||| || |||||| | ||||| || |||| || || | Sbjct 1506 GCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCAGAGGTGTATTCGCTGCTCA 1565 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAA-----CACATGCTCTTTAACGCAATCGA 125347 |||||| |||||| ||| |||||| | | ||| |||| | || ||||| Sbjct 1566 TTGACACGTACATCAAGGAT--GCAACGGAGAAGGACCACCTGCTGCGT---GCCATCGA 1620 Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGA-CGACA 125406 ||| | |||| | | || || || || |||| | | |||| ||| ||| Sbjct 1621 TACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGT 1680 Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466 ||| |||||| | || | ||| |||| ||||| || || |||||||||||||| |||| Sbjct 1681 -GTCGTCGTACCCGGAGCGTCTGCTGGCGTTCGCAGCTGTGGAGGGCATCTTCTTCTCGG 1739 Query 125467 G-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 | | ||| ||| ||||||| ||||||||||||||||| |||||||| || |||| | Sbjct 1740 GCTCGTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTC 1798 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||| | || || ||||||||| | ||| ||||| || Sbjct 1799 TCGAACGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGC 1845 Score = 118 bits (130), Expect = 2e-21 Identities = 147/197 (75%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 125698 TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC 125757 |||| |||||||||| ||| |||||| ||||||| ||||| ||||| || ||||| | Sbjct 2090 TGATCGGCATGAACTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGC 2149 Query 125758 TGTACGAGTTGATTG-GCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACC 125816 ||||| | || || | || ||||| ||||||| ||||| || || || | ||| | Sbjct 2150 TGTACTCGCTGGGTGTGTCG-AAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGAC 2208 Query 125817 AGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA--CAAAC 125874 | || || || |||| ||||||||||||||||||||| || ||||||| | || Sbjct 2209 ATGATCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTACTCGAAG 2268 Query 125875 GCTACGGTGTCGGTGTC 125891 || |||||| |||||| Sbjct 2269 GC--CGGTGTGGGTGTC 2283 >seq584 Length=26749 Score = 163 bits (180), Expect = 4e-35 Identities = 536/812 (66%), Gaps = 42/812 (5%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| | | || ||| | ||| | |||||||| ||||| ||||||| || Sbjct 11862 CTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCTCGTTC 11803 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| ||| | || ||| | | |||||| | || |||| || | |||| Sbjct 11802 TGGACGGCCGAGGAGCTGGACCTGGCGCACGACCTGAAGGACTGGGCGAACC---TGACG 11746 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | ||||| || || |||| | |||||||||| || | | ||| || ||| Sbjct 11745 GACAACGAGCGGTTCTTCATCAAGCACGTGCTGGCCTTCTTCGCTGCCAGCGACGGCATC 11686 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTCGT 125232 || ||||| || ||| | || || || ||| || || | || |||| | Sbjct 11685 GTGAACGAGAACCTG--GCCATGAACTTCAGCAATGAAGTGCAGGTGCCGGAGGCCCGCT 11628 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 |||| ||||| ||||| ||| || |||||| | |||||||| |||| || || | Sbjct 11627 GCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTATTCGCTGCTCA 11568 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAA-----CACATGCTCTTTAACGCAATCGA 125347 |||||| |||||| ||| || ||| | | ||| |||| | || ||||| Sbjct 11567 TTGACACGTACATCAAGGATGCG--ACGGAGAAGGACCACCTGCTGCGT---GCCATCGA 11513 Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGA-CGACA 125406 ||| | |||| | | || || || || |||| | | |||| ||| ||| Sbjct 11512 TACGATTCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGT 11453 Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466 ||| |||||| | || | || |||| ||||| |||| |||||||||||||| |||| Sbjct 11452 -GTCGTCGTACCCGGAGCGCGTGCTGGCGTTCGCAACCGTGGAGGGCATCTTCTTCTCGG 11394 Query 125467 G-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 | | ||| ||| | ||||| ||||||||||||||||| |||||||| || |||| | Sbjct 11393 GCTCGTTCTGCT-CGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTC 11335 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTT 125585 |||||| | || || ||||||||| | ||| ||||| || || ||| Sbjct 11334 TCGAACGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGT-- 11277 Query 125586 CGCAACTATCTGCGTCCCGAG-TGC---AGATCCAGCGATGAAAAGGTCATCAACATTGT 125641 | | | ||| | || ||| ||| || ||| || | | | || || Sbjct 11276 -ACTCCAAGCTGGTGAACAAGCTGCCGGAGAGCC-GCG-TGCA--------CGAGATCGT 11228 Query 125642 AACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGT-CAGCATGA 125700 ||| || |||| ||| || || ||||| | || || || || || ||| ||| Sbjct 11227 GCGCGACGCGGTGACGATCGAGCACGAGTTCGTGCGTGACTCGCTCCCTGTGGAGC-TGA 11169 Query 125701 TTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGT 125760 | |||||||||| ||| |||||| | ||||| ||||| ||||| || ||||| |||| Sbjct 11168 TCGGCATGAACTCGGGGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGTCTGCTGT 11109 Query 125761 ACGAGTTGATTG-GCCGCAAGATTTACAACGC 125791 | | || || | || ||||| |||||||| Sbjct 11108 GCTCGCTGGGTGTGTCG-AAGATCTACAACGC 11078 >seq1023 Length=18726 Score = 122 bits (134), Expect = 1e-22 Identities = 292/434 (67%), Gaps = 6/434 (1%) Strand=Plus/Minus Query 97785 AACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCT 97844 ||||| |||||||||| || ||||| |||||| |||| |||| | |||| || Sbjct 2641 AACTCGCTGCTGGTGGCCCCCATGCCGACGGCTTCCACGGCCCAGATCCTTGGAAACAAC 2582 Query 97845 GAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTT 97904 || ||| | || |||| |||||| ||||||||| | | || | | |||||||||| Sbjct 2581 GAGTCTATCGAGCCGTACACGTCCAACATGTACAACCGCCGAGTGCTGGCTGGAGAGTTC 2522 Query 97905 -CAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACG-GCTCAATCTGTGGAACGATG 97962 | || | | ||| | || || | || || | || |||| | |||| | Sbjct 2521 ACGATCGTC-AACAAGTACCTGATGAAGGAGCTG-ATCGAGCTCGGCATCTGGACGCCGG 2464 Query 97963 ACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGG 98022 || || | | |||| || || ||| || ||| | || ||| | | ||||||| Sbjct 2463 ACGTGCGCAACCAGATCTTGAACGACAGCGGCTCCGTGCAGAACGTCAAGGCGATCCCGG 2404 Query 98023 AAGA-GTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGAT 98081 | | || | |||| |||||||| || |||||||| | ||| || || | || Sbjct 2403 ACCACGTCAAGGAGAAG-TACAAGACGGTGTGGGAGATCAAGCAGAAGGCGGTGCTGGAC 2345 Query 98082 ATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCC 98141 || | |||||| | |||| |||||| ||||||||| ||| |||| | || | ||| Sbjct 2344 CTGTCGGCCGACCGCGGTGCGTACATTTGCCAGAGTCAGTCGCTCAACATCCACATCGCC 2285 Query 98142 GAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAG 98201 || || ||| ||| | || ||||| ||||| ||||| ||||| ||||| |||||| Sbjct 2284 GACCCGACCATCAGCAAGCTCACGTCGATGCACTTCTACGCCTGGAAGAAGGGGCTCAAG 2225 Query 98202 ACGGGCATGTACTA 98215 || ||||||||||| Sbjct 2224 ACCGGCATGTACTA 2211 Score = 87.8 bits (96), Expect = 3e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAAC 96965 ||| |||| ||||| ||||||||||| || || || || || | || | || || ||| Sbjct 3532 GCCATCTATTTGGAGCCTTGGCACGCAGATGTGTTCGAGTTCTTGGACCTCCGTAAGAAC 3473 Query 96966 TCTGGCTTTGAAGAGGCAC-GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTT 97024 ||| || | |||| | || | ||| |||| || || || |||||||| ||| | Sbjct 3472 CACGGCAACGA-GTTGCACCGCGCTCGCGACCTGTTCTACGCCCTTTGGGTGCCTGATCT 3414 Query 97025 GTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACC 97084 |||||||||| | || | | | |||| | ||||| || | ||||| || | | || Sbjct 3413 GTTCATGAAGAGGGTGGAAGCCAATGGCAAGTGGAGTCTCTTTTGCCCTAACGAGGCCCC 3354 Query 97085 CGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCC 97121 || || | || ||||||||||| || || |||||| Sbjct 3353 TGGACTCTATGAGTGCTGGGGCGACGAATTCGAGGCC 3317 >seq2043 Length=11907 Score = 118 bits (130), Expect = 2e-21 Identities = 277/410 (68%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 ||||| || || || || ||||| ||||||||| | || | || | ||||| ||| Sbjct 5469 GGCGACCTCGGACCGGTCTACGGCTTCCAGTGGCGTCATTTTGGAGCAAAGTACACGGAC 5410 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTC 70184 ||| | | ||||| | |||||||| || || || | || || | ||||||| | Sbjct 5409 ATGCACGCC-GACTACACTGGTCAGGGCGTGGACCAGCTCGCTGAGGTT-ATTGACAAGC 5352 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | || ||||| || || | ||||||| ||| | |||||||| || ||| | Sbjct 5351 TGCGCACAAATCCGACCGACCGTCGGATCGTGCTGTCGGCGTGGAATCCGGCGGATCTCA 5292 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATGGCAAA 70303 | | ||||| || || ||||| ||| |||| || ||||| ||| | ||| ||| | Sbjct 5291 ATGAGATGGCGCTCCCGCCGTGCCACATGTTCTGC-CAGTTCTACGTGGCCGACGGCGAG 5233 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 ||||| ||| ||||| ||| | ||||||||||| || || || || || ||||| Sbjct 5232 TTGTCCTGCCAGATGTACCAGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTCAACATC 5173 Query 70364 GCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAG 70423 || ||||| | || | |||| |||| || || | | || ||||| | |||| Sbjct 5172 GCCAGCTACGCGTTGCTTACGCGACTGATAGCACAGGTGAGTGGACTGAAGCCTGGCGAG 5113 Query 70424 TTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 || || ||| ||||| || || ||||||||| | || || ||||||| Sbjct 5112 TTTGTCCACGTTATTGGTGATGCCCACGTGTATCTTAACCATGTCGAGCC 5063 >seq1651 Length=12449 Score = 116 bits (128), Expect = 5e-21 Identities = 217/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| ||||| |||||||||||||| |||||| || || |||||||| | ||||||| Sbjct 5512 GAAGCCGTGGGTCAGGTGGCCTCCACTGGGCAGGTCCAGGCCCATGATGCGGTCGTGCGG 5453 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | | | ||||||||||| |||||||| ||||||||||||||| || || Sbjct 5452 GCGCAGCAGCGCCGTGTACACGGCGAAGTTGGCGGGCGAGCCCGAGTACGGCTGCACGTT 5393 Query 127563 CACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAG 127622 || ||||| | | ||||| || | | || | || |||||||| || | Sbjct 5392 GACGCCCCACTTGTCCTCGTCCAGGCCGTAGGCCGTCAGGGCGCGCTGCTGGCACAGGAT 5333 Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCCGGGCCTACCCTCC 127680 ||||| ||||| | |||||| || || ||||| ||| ||| ||| ||||| Sbjct 5332 CTCGATCTTGTCGATGATCTCGTTGCCGCCGTAGTAGCGCGCGTTC--GGCAGGCCCTCG 5275 Query 127681 GAGTACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAGTTT 127740 | |||||||||| | |||||||| | || ||| || || | | | || ||||| Sbjct 5274 GCGTACTTGTTGGTCAGACACGAGCCCAGGCAGTCCATGACGGCGCGCGACGTGAAGTTC 5215 Query 127741 TCCGATGCGATCAACTC 127757 ||||| ||||| | ||| Sbjct 5214 TCCGAGGCGATGAGCTC 5198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740971810593840