Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq816 89.7 5e-13 >seq816 Length=21980 Score = 89.7 bits (98), Expect = 5e-13 Identities = 183/270 (68%), Gaps = 19/270 (7%) Strand=Plus/Plus Query 99544 CGCACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCAGGCCTCCAGGCAG 99603 || ||||| ||| |||||||||||||||||||| | || |||| || |||| Sbjct 5260 CGGACGGTAAGCACAGTGTTGAGCAGCAGCACGCCCTGTCGACTCCAGCAAGACAAGCAG 5319 Query 99604 CCGTGCTGCGGCCGCGGGGTCCCGGGGAAGTTCTTCTGCACGGCCGCGT---AGATGTTC 99660 ||||| || |||| | || | |||| | |||| | | |||||||| Sbjct 5320 CCGTGGGTGGGGCGCGCAATGCCCACGTCGTTCAT------GGCCTCCTTGAAGATGTTC 5373 Query 99661 TGGAGGCTGGGCGGGATCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCCGTGGGCCTGC 99720 | |||||||||||| ||| || ||| || ||| ||| ||| ||||| |||||| Sbjct 5374 TTGAGGCTGGGCGGCGGCGGGACTCCGTGGCGCACCGAGAAACTCAGTCCGTGAGCCTGC 5433 Query 99721 CCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGACGTCCTCG--GGCGC-- 99776 | | |||||| |||||||||||||| || || ||||||| ||| | ||||| Sbjct 5434 TGCGGCCCGTGGTACGGGTCCTGGCCCAGAATCACCACCTTGAGGTCGGAGAAGGCGCAG 5493 Query 99777 -CGCGTAGCGCGTCCACGCGAAGACGTCCG 99805 | || ||||| |||||| ||||||| Sbjct 5494 TCTCGCAGCGC-----CGCGAACACGTCCG 5518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440847206961840