Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq671 168 6e-37 >seq671 Length=24399 Score = 168 bits (186), Expect = 6e-37 Identities = 281/401 (70%), Gaps = 4/401 (1%) Strand=Plus/Minus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACG-CCACCT 5558 |||||||||| ||||| ||||| ||||| | |||| || || | | || |||||| Sbjct 16943 CACGCCCGTGCTGCCGAAGCCGCCGGCGCCACGCGCCGTGTCCTCGAT-CTCGTCCACCT 16885 Query 5559 CTTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCT 5618 | | | || ||| || | |||| ||| |||||||| | ||||| || || Sbjct 16884 CCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTCTCCGCGCT 16825 Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 | || ||| || | | || ||||||||| | ||||||||||||||||||||||| Sbjct 16824 TGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGT 16765 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 ||||||| |||||||| |||||| ||||||||| ||||||| ||| || |||||||| | Sbjct 16764 CGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTGCTTGAGCGCGAGTCCGGAGCGCG 16705 Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACTC 5798 | |||||||| ||||||| || ||||| | || ||||||||| || | | Sbjct 16704 GCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTTGACGAGGC 16645 Query 5799 GCCGACCGCCCGCAGGGACGATGCAGTCGCAAGC-GCTGCAGAGGTCGTACCCGGCCGCC 5857 | |||||||| |||| | | |||| |||| || | | ||||| || || ||| Sbjct 16644 CCTTGCCGCCCGCGGGGATCACGGCGTCGTAAGCAGCCG-ACAGGTCCAGACCCGCGGCC 16586 Query 5858 CGCGGGGACCCCCTGGTGGGGAGCGTGGCGTTGGGGGACAG 5898 || ||| || | || || || |||| | ||||| ||| Sbjct 16585 AGCATGGAGCCGCGCGTTGGCAGGATGGCTTCGGGGGTCAG 16545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430004953689008