Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq2043 143 2e-29 seq671 87.8 1e-12 >seq2043 Length=11907 Score = 143 bits (158), Expect = 2e-29 Identities = 373/564 (66%), Gaps = 21/564 (4%) Strand=Plus/Plus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| ||||| || || || | || || ||||| || || || | | |||| Sbjct 5048 AGCTGCTTCTGGAGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGG 5107 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532 |||||||| || || | || || | || | || |||| ||| || | |||| Sbjct 5108 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 5167 Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACA 25592 ||||||||||| || || || || | |||||||| || || | |||||| | ||| || Sbjct 5168 CTGGCGATGTTGAACGGCACGCCAAGTCCCATGTCGGCC-GAGCGCTGGTACATCTGGCA 5226 Query 25593 CGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 || | ||| ||||| |||||| ||||| || | ||| |||||| || || || || Sbjct 5227 GGACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT 5286 Query 25653 AAGGCCCA---AG-TCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCT-TCTGGG 25707 | || || || || ||||| || ||| | ||| | | ||| || | Sbjct 5287 ----CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGAT 5342 Query 25708 TTGTCCC-----TGATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 25762 |||| | || || | || | | | ||||| ||||| ||| || | || Sbjct 5343 TTGTGCGCAGCTTGTCAATAACCTCAGCG------AGCTGGTCCACGCCCTGACCAGTGT 5396 Query 25763 AGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCG 25822 |||| || |||||||||||||| |||||| |||| | ||||||||| ||||| |||| Sbjct 5397 AGTCGGCGTGCATGTCCGTGTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCG 5456 Query 25823 GTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAAC 25882 |||| ||||| ||| |||||| || | || | | |||| | | || | || | Sbjct 5457 GTCCGAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGATC 5516 Query 25883 CATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTC 25942 ||||| |||||||||| | | ||||||| ||| | | | ||| || | Sbjct 5517 CATTGCCGTCCCAGATGTGGATATCCTTCTCCTGCAGCGTGTGCGCACTCGTGTCGCCAC 5576 Query 25943 TGACGAACCACAGCAGCTCCGCCG 25966 ||| |||||||||||||||| ||| Sbjct 5577 TGATGAACCACAGCAGCTCCTCCG 5600 >seq671 Length=24399 Score = 87.8 bits (96), Expect = 1e-12 Identities = 203/306 (66%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 40691 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 40750 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 16892 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 16833 Query 40751 GCCCCTCTCGACCCGAAAAGGGTCGCACCCAAAGTTAAACAATATGACGCCGAGGTTGCC 40810 || | || ||| | || ||| | | ||| |||| || ||||| | |||||| Sbjct 16832 TCCGCGCTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 16773 Query 40811 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTCCAGGGCCAGGCC 40870 | |||||||| ||| | ||| ||||| || ||| || || | | || || || || Sbjct 16772 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTGCTTGAGCGCGAGTCC 16713 Query 40871 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTTACGGCCAGGTCCGTCTT 40930 ||| | || ||||| | ||||| ||| ||| | | | ||||||||||||| Sbjct 16712 GGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 16653 Query 40931 TACCAGGGCCCTGCCAAAGGAGGGGACCACGACCGGGTAAGCGGCCGCTAGGTCGTAACC 40990 || ||| || |||| | ||||| |||| | |||||| |||| ||||| ||| Sbjct 16652 GACGAGGCCCTTGCCGCCCGCGGGGATCACGGCGTCGTAAGCAGCCGACAGGTCCAGACC 16593 Query 40991 CGCGGC 40996 |||||| Sbjct 16592 CGCGGC 16587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340098492041682