Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1050 109 5e-19 seq93 107 2e-18 >seq1050 Length=18215 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| || | || |||| ||||| ||||| || || ||||| || | ||| || ||||| Sbjct 5453 TCCACCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 5394 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || ||| | ||||||||||| || ||| | ||||| | | ||||| || || || Sbjct 5393 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 5334 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 || || || ||||| | ||| || ||| ||| | ||| | ||| | | || || Sbjct 5333 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 5274 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| | ||||||||| || || || || || || || ||||||||||||| Sbjct 5273 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATGC 5224 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || || ||||| || | ||| || ||||||| ||| | Sbjct 5212 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 5153 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | ||||| | | ||||| || || || || || || ||| Sbjct 5152 TCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 5093 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||| ||| | | | | ||| | | || ||||| | ||||||| Sbjct 5092 TCCTGAATCTTCTGCTTCACGTTGTCAATCGAGTCCGACGGCTCCACGTCGAGCGTGATG 5033 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || || || |||||||| Sbjct 5032 GTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCAT 4998 >seq93 Length=57835 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || || ||||| || | ||| || ||||||| ||| Sbjct 55074 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCG 55015 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| | | ||||| || || || || || |||||| Sbjct 55014 TCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCTTTG 54955 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || ||| ||||||| | ||| | ||| | | || ||||| | |||||| Sbjct 54954 TCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATC 54895 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||||||||||||||||| Sbjct 54894 GTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATGC 54858 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || || ||||| || | ||| || ||||||| ||| Sbjct 55302 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCG 55243 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| | | ||||| || || || || || |||||| Sbjct 55242 TCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCTTTG 55183 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || ||| ||||||| | ||| | ||| | | || ||||| | |||||| Sbjct 55182 TCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATC 55123 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||||||||||||||||| Sbjct 55122 GTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATGC 55086 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || || ||||| || | ||| || ||||||| ||| Sbjct 55530 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCG 55471 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| | | ||||| || || || || || |||||| Sbjct 55470 TCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCTTTG 55411 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || ||| ||||||| | ||| | ||| | | || ||||| | |||||| Sbjct 55410 TCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATC 55351 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||||||||||||||||| Sbjct 55350 GTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATGC 55314 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || || ||||| || | ||| || ||||||| ||| Sbjct 54846 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCG 54787 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| | | ||||| || || || || || || ||| Sbjct 54786 TCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTG 54727 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || ||| ||||||| | ||| | ||| | | || ||||| | |||||| Sbjct 54726 TCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATC 54667 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || || || || || ||||| ||||||||||| ||| Sbjct 54666 GTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATACTT 54628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448238335260240