Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1362 140 5e-29 seq239 136 6e-28 seq512 127 3e-25 >seq1362 Length=14712 Score = 140 bits (154), Expect = 5e-29 Identities = 179/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| ||| || || ||||| || |||||||| || ||||||||||| || | Sbjct 1211 CGCTAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 1269 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || |||||||| || || |||||| |||| || | |||| || |||| Sbjct 1270 TCCGTCGTCTCGCACGTCGTGGCGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGA 1329 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | |||||| ||| ||| |||| || | || || || | Sbjct 1330 CCCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACTTACACGG 1389 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || || ||||| ||||||| |||| || || | || || || | Sbjct 1390 AGCACGCTCGCCGCAAAACCGTCACTGCCATGGACGTCGTGTACGCTCTCAAGCGCCAGG 1449 Query 16671 GCCG 16674 | || Sbjct 1450 GACG 1453 >seq239 Length=39573 Score = 136 bits (150), Expect = 6e-28 Identities = 178/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 2211 CGCCAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 2269 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || || |||||||| || ||||| |||| || | |||| || |||| Sbjct 2270 TCCGTCGTCTCGCACGCCGTGGTGGTGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGA 2329 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | |||||| ||| ||| |||| || | || ||| || | Sbjct 2330 CCCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACTG 2389 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || || || || ||||||| |||| || || | || || || | Sbjct 2390 AGCACGCTCGCCGCAAAACCGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGCCAGG 2449 Query 16671 GCCG 16674 |||| Sbjct 2450 GCCG 2453 >seq512 Length=28675 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 15025 CGCCAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCGGCCA 14967 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||||||||| || || ||||| |||| || | |||| || |||| Sbjct 14966 TCCGCCGTCTCGCTCGTCGTGGCGGTGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGA 14907 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| | | ||| |||| || | || || || | Sbjct 14906 CGCGCGGCGTGCTCAAGGTCTTCCTGGAAAACGTCATCCGCGACTCCGTCACGTACACGG 14847 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || ||||| || ||||||| |||| || || | || ||||| | Sbjct 14846 AGCACGCTCGTCGCAAAACTGTGACGGCCATGGACGTCGTGTACGCGCTCAAGCGTCAGG 14787 Query 16671 GCCG 16674 | || Sbjct 14786 GACG 14783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79066574427762