Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1023 349 9e-91 >seq1023 Length=18726 Score = 349 bits (386), Expect = 9e-91 Identities = 1070/1631 (66%), Gaps = 39/1631 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 |||||||| ||||| || ||| | | || || || || | ||||| |||| ||| Sbjct 3832 TTCACGCATGCCACCCCGACACTTTTTAACGCCGGCACGCCGCGCCCACAACTGTCGTCT 3773 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | ||| | ||||| || || || || || | ||||| | ||| | Sbjct 3772 TGCTTCCTATTGGCCATGCAAGACGACTCAATTGAAGGCATTTACGACACGTTAAAGCAA 3713 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| ||| || || || || || ||||| | || ||||| | || || Sbjct 3712 TGTGCCTGTATCTCTAAATGGGCCGGAGGTATTGGCATCAGTATGCACAACATCCGAGCC 3653 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| ||||| || ||||| || | || ||||| | | |||||||| || Sbjct 3652 ACCAACAGCTACATCCGAGGCACGAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGG 3593 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||||| || | || ||| ||||||| |||||||| ||||| ||||| || || | || Sbjct 3592 GTGTTTAACGACACCGCGCGGTACGTGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCTTC 3533 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || ||| | |||||| || || ||| | || ||||| | || ||||| || ||| Sbjct 3532 GCCATCTATTTGGAGCCTTGGCACGCAGATGTGTTCGAGTTCTTGGACCTCCGTAAGAAC 3473 Query 363907 ACGGGAAAAGAGGAATTGC---GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 || || ||| |||| | || || || |||||||| || |||||||| |||| Sbjct 3472 CACGGCAACGAG---TTGCACCGCGCTCGCGACCTGTTCTACGCCCTTTGGGTGCCTGAT 3416 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGT 364023 | || |||||| | ||||| || | || ||| ||||||||||| |||| Sbjct 3415 CTGTTCATGAAGAGGGTGGAAGCCAATGGCAAGTGGAGTCTCTTTTGCCCTAACGAGGCC 3356 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 || || || | || ||||| ||||| | | || || || |||||||| || || Sbjct 3355 CCTGGACTCTATGAGTGCTGGGGCGACGAATTCGAGGCCCTCTATGAAAAGTACGAGACG 3296 Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 |||||| || || ||||| || ||| ||| |||| ||||| ||||| |||| | Sbjct 3295 GAGGGACGCGCCCGCAAGACGATCAACGCCCAGCAGCTGTGGTTCGCCATATTGGACGCC 3236 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 ||||| ||||| ||| |||| |||||||||||| || || |||||||||||| ||| Sbjct 3235 CAGATCGAGACGGGAGTGCCCTTTATGTTGTACAAGGACGCGGCCAACCGCAAGTCGAAC 3176 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||| |||| || || || | |||||| |||| ||| | || || ||||| Sbjct 3175 CAGCAGAACCTCGGCACGATCCGCTCCAGCAACTTATGCTGTGAGGTGATGGAGTACACG 3116 Query 364264 GCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAA 364323 | || |||||| || || || ||| | ||||| | ||||| || ||| || | Sbjct 3115 TCGCCAGACGAGGTGGCTGTGTGCAACTTGGCGTCTGTGGCGCTGCCTAAGTTCGTGGAG 3056 Query 364324 GATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTC 364383 || || ||| || ||||| | | ||||| || || | | || |||| | Sbjct 3055 GAAGGAGTTTTCAACTACCAGAAGTTGTATGAAGTGACGAAGGTGGTCACCCGCAACTTA 2996 Query 364384 GACAAGGTTATCGACAAGAATTATTATCCAATTCCTGA---AGCCGAGC-GTTCTAATAT 364439 ||||||| |||||| || || || || | ||| || || || || || || Sbjct 2995 AACAAGGTCATCGACGTCAACTACTACCC----CGTGATCGAGGCGCGCAAGTCCAACAT 2940 Query 364440 GCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAA 364499 |||||| ||||| || ||| |||| || ||||||||||| |||| ||||| | | || Sbjct 2939 GCGTCACCGCCCCATCGGTATTGGCGTCCAGGGCCTCGCGGACGCGTTTATCCTCATGAA 2880 Query 364500 GATGGCATTTGATTCGCCTG-ACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGT 364558 || || || || | | || || | || || ||| | ||||| || || || | Sbjct 2879 CTACGCGTTCGA-GAGCGAGAAGGCCCGGGAGCTCAACAAGAACATCTTCGAGACCATCT 2821 Query 364559 ATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAA--AACCAAGGGAAAGTACTCTAC 364616 | || ||||| ||| | ||| || | || || ||| || |||| || Sbjct 2820 ACTTCGCCGCCATGGAGACGTCGATGGAGATCGCCAAGGAAC--TCGGCCCGTACGAGAC 2763 Query 364617 TTATGAGGGGTC-CCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGC 364675 | |||| || ||| || | |||| | |||||||| || | ||| ||||| | Sbjct 2762 GTTCCAGGGCTCGCCCGCTAGC-AAGGGCATCTTCCAGTTCGACATGTGGGGCGTCACCC 2704 Query 364676 CATCTGTCCG----ATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACT 364731 | || ||| | |||||||||| |||||| |||| | ||||| || ||| Sbjct 2703 CGTC-GTCGGGTATGTGGAACTGGGCTACGCTCAAGGAGGACGTGATCAAGCACGG-ACT 2646 Query 364732 -CGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAA 364790 |||||||| || | || |||||||| |||||||| || || |||||||| ||||| Sbjct 2645 CCGCAACTCGCTGCTGGTGGCCCCCATGCCGACGGCTTCCACGGCCCAGATCCTTGGAAA 2586 Query 364791 CAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGA 364850 |||||||| |||| |||| || ||| | || ||||| || || | ||||| Sbjct 2585 CAACGAGTCTATCGAGCCGTACACGTCCAACATGTACAACCGCCGAGTGCTGGCTGGAGA 2526 Query 364851 ATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGA 364910 || || | || || |||||||| | ||||| || ||| | ||| | | || | Sbjct 2525 GTTCACGATCGTCAACAAGTACCTGATGAAGGAGCTGATCGAGCTCGGCATCT-GGACGC 2467 Query 364911 CAG-CATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGG-ATTT 364968 | | | || ||| | ||| | || | || || ||||||||| || ||| | Sbjct 2466 CGGACGTGCGCAACCAGATCTTGAACGACAGCGGCTCCGTGCAGAAC-GTCAAGGCGATC 2408 Query 364969 CCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GAA--CTCTC 365025 || || | | ||| | ||||| || || ||||| || || || ||| | | Sbjct 2407 CCGGACCACGTCAAGGAGAAGTACAAGACGGTGTGGGAGAT---CAAGCAGAAGGCGGTG 2351 Query 365026 ATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTC 365085 | || || ||||||| |||||||| | || || ||||| |||||| | ||| | | Sbjct 2350 CTGGACCTGTCGGCCGACCGCGGTGCGTACATTTGCCAGAGTCAGTCGCTCAACATCCAC 2291 Query 365086 ATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGT 365145 || | | || ||| | |||||| || || ||||| ||||||| ||||| || Sbjct 2290 ATCGCCGACCCGACCATCAGCAAGCTCACGTCGATGCACTTCTACGCCTGGAAGAAGGGG 2231 Query 365146 CTTAAGACAGG 365156 || ||||| || Sbjct 2230 CTCAAGACCGG 2220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303196059577388