Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1009 96.9 3e-15 seq93 89.7 4e-13 seq1050 86.0 5e-12 >seq1009 Length=18926 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || ||||| | || Sbjct 8303 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 8244 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | | ||| || |||| || ||||| || ||||||||||| || || || || || Sbjct 8243 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 8184 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| |||||| | || || |||||| Sbjct 8183 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTATCGGACTACAAC 8124 Query 22399 ATTCAAAA 22406 || || || Sbjct 8123 ATCCAGAA 8116 >seq93 Length=57835 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||| || || ||||| | | Sbjct 54632 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 54691 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | |||| ||||| || || ||||||||||| || || || || || Sbjct 54692 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 54751 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | ||||| ||||| | ||| |||||| Sbjct 54752 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 54811 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || | || |||| ||||||| || Sbjct 54812 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGG 54858 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || ||| |||| || || ||||| | | Sbjct 54860 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 54919 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | |||| ||||| || || ||||| ||||| || || || || || Sbjct 54920 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAAGAGGGCATCCCGCCTGACCAG 54979 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | ||||| ||||| | ||| |||||| Sbjct 54980 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 55039 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || | || |||| ||||||| || Sbjct 55040 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGG 55086 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || ||| |||| || || ||||| | | Sbjct 55088 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 55147 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | |||| ||||| || || ||||| ||||| || || || || || Sbjct 55148 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAAGAGGGCATCCCGCCTGACCAG 55207 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | ||||| ||||| | ||| |||||| Sbjct 55208 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 55267 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || | || |||| ||||||| || Sbjct 55268 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGG 55314 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || ||| |||| || || ||||| | | Sbjct 55316 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 55375 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | |||| ||||| || || ||||| ||||| || || || || || Sbjct 55376 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAAGAGGGCATCCCGCCTGACCAG 55435 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | ||||| ||||| | ||| |||||| Sbjct 55436 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 55495 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 55496 ATTCAGAAGGAGTCGAC 55512 >seq1050 Length=18215 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || || |||| || || ||||| | | Sbjct 4998 ATGCAGATTTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 5057 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || || ||||| ||||||||||| || || ||||| || Sbjct 5058 GACTCGATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 5117 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| | ||| |||||| Sbjct 5118 CAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 5177 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 5178 ATCCAGAAGGAGTCGAC 5194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419679740986210