Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq949 206 5e-48 seq584 138 2e-27 seq58 105 1e-17 seq290 87.8 4e-12 >seq949 Length=22177 Score = 206 bits (228), Expect = 5e-48 Identities = 663/1011 (66%), Gaps = 37/1011 (4%) Strand=Plus/Minus Query 279361 ACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACA 279420 |||| || ||||||||||| || ||||| | ||||||||| ||| |||| || | Sbjct 18860 ACTGCGAGTTCTCGCTCGCTTACGGTGGTATGATTCTGCTGAACAACGCCCGTCTTCGCC 18801 Query 279421 TCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAA 279480 ||||||||||| |||| || ||||| ||||||||| || |||||| || || | Sbjct 18800 TCAAGCGTGGCCACCGTTACGGTCTGTGCGGTCCCAACGGTTGTGGTAAGTCGACGCTGA 18741 Query 279481 TGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATCTGAGGTAAGGACAG 279540 ||||||||||||| ||||| ||||| || || || || | | ||| | | ||| | Sbjct 18740 TGCGCGCCATTGCCAACGGCCAGCTTGAGGGCTTCCCCAGCAAGGACGAGCTGAAGACTG 18681 Query 279541 TGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGTTCGACTTCCTAA 279600 ||| || |||||| || | | | || | || | ||| |||||||| | Sbjct 18680 TGTTCGTCGAGCACAACCTGCAGGCTTCGGAGGCTGAGCTTTCGGTGGTCGACTTCATCC 18621 Query 279601 CGTCTGACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCATCCAGAAACTGGAGG 279660 | ||| | | | | ||| || | ||| |||| | | || || || Sbjct 18620 TGATTGATGACGACCTGAAGGA---CACCCCTCGCAAGGAGGT--TGAGGACGCTCT-GG 18567 Query 279661 CCAATG--GTTTTGATGAAAGA-ATGCGTAATCTGCCAGTAGGTTCTCTGTCGGGTGGTT 279717 | ||| | || | || |||| || | | || || || || |||||||||| Sbjct 18566 CTGATGTCGGCTTCACCGCCGAGATGCAGGCTCAGGCCGTGGGCTCCCTTTCGGGTGGTT 18507 Query 279718 GGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTACTGCTTG 279777 |||||||||| || | || | || || || || ||| || || | || ||||||| Sbjct 18506 GGAAGATGAAACTCGAGCTGTCGCGTGCTATGCTGCTGAAGGCTGACATTCTGCTGCTTG 18447 Query 279778 ATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTACCTAACCA 279837 ||||||| || |||||| |||| || ||||| |||||||| | | |||||| || | Sbjct 18446 ATGAGCCGACGAACCACTTGGATGTCAAGAACGTCGCCTGGCTTGAGAACTACCTGACGA 18387 Query 279838 GTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGATGCCGTGT 279897 | || || ||| | ||| |||| || || ||||||||||||||||| || ||||| Sbjct 18386 GCGTGCCGACTGTCACCTCCATCATGGTGTCCCACGACTCTGGCTTCCTCGACAACGTGT 18327 Query 279898 GCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAGCACATCGGCAACC 279954 | | |||||| ||||| ||| | || |||||| ||| ||| ||||||| Sbjct 18326 GTACCAACATCATCCACTACGAGACCCGTAAGCTGAAGATCTATAAG------GGCAACC 18273 Query 279955 TGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTGAAGGACGCCA 280014 | ||| ||||| | || || ||||| |||||||| || ||| || | || Sbjct 18272 TTTCTCTCTTCGTTGAGCAGAAGCCCGAGGCCAAGGCCTACTACGAGCTGGAGTCGGACA 18213 Query 280015 CCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC-ACATCAAAGGATCGC 280073 || |||| ||||| ||||| || || || | | |||| | | ||| || || Sbjct 18212 ACGTGAAGTTCACGTTCCCGGAGCCTGGTTTCCTTGCTGACATCAAGAACAAGGGTAAGC 18153 Query 280074 GCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGG--CCCCAACATCTTC- 280130 | ||||| || | ||| | || || ||| |||||| | || Sbjct 18152 -CCATCATTCGTCTGACCAACTGCTCGTACCAGTACCC---TGGTACCCCAAAGCCGTCG 18097 Query 280131 AGCAGTGTCAACTCG--CAGGT---TTCTAT-GAACTCACGGATTGGTGTCATTGGACCC 280184 | || || |||| | || ||| | || | || || | ||| |||| ||| Sbjct 18096 ATCAACAACATCTCGGTGACGTGCGCTCTGTCGAGC---CGTATCGCTGTGCTTGGTCCC 18040 Query 280185 AATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGAG 280244 || ||||| |||||||| || || ||||| | ||||| || ||| || | || ||| Sbjct 18039 AACGGTGCCGGTAAGTCGACGCTGATCAAGATGCTGACGGGTGAGGTGGAGCCGAC-GAG 17981 Query 280245 GGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCA 280303 |||| || |||||||| || |||||| | || ||||| ||||||||||||||||| Sbjct 17980 CGGTCAGGTGTGGAAGCACCCTTCCATGCGTTTCGCCTACGTGGCTCAGCACGCTTTCCA 17921 Query 280304 CCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 |||||| ||| ||||| ||| ||| | ||||| ||||| |||||||| Sbjct 17920 CCACATTGAGTCGCACCTCGACGAGACGGCCAACCAGTACATCCAGTGGCG 17870 >seq584 Length=26749 Score = 138 bits (152), Expect = 2e-27 Identities = 495/757 (65%), Gaps = 19/757 (3%) Strand=Plus/Plus Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CG 251720 ||||| ||||| ||||| | || || | ||| || | ||||||||||| |||| | Sbjct 11117 CGGTCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATGCCGATCAGCTCC 11176 Query 251721 ACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGC 251780 ||| ||| | |||| | ||| || | ||| | | || || || ||| || | Sbjct 11177 ACAGGGAGC-GAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCTC 11235 Query 251781 CTTCACCTGTGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAA-C 251838 | ||| | | | |||||||||| ||||||| ||||||| ||| | ||| || | Sbjct 11236 GTGCACGCGGCTCTCCGGCAGCTTGTTCACCAGCTTGGAGTACATGAGGCACGCGAAGTC 11295 Query 251839 TGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATC 251898 || ||||| |||||||| || ||||| | |||||| || | | |||||||||||| Sbjct 11296 CGT--GTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATG 11353 Query 251899 ACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCG 251958 | || || ||| ||||||||||||| | ||| || || || ||||| | | ||||| Sbjct 11354 AGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCC 11413 Query 251959 ACACACACCCATGCAACAAGGCGCTCAGCAAACGACTTGTCCTGCG---ACAAGAACTTC 252015 || | | || | | |||||| | ||||| | ||| | |||| Sbjct 11414 ACGGTTGCGAACGCCAGCACGCGCTCCGGGTACGACGACACTCGCGGGTCGCACCACTTG 11473 Query 252016 TGTGCCCA-TGCTGCCTTCTT-TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAG 252073 | ||||| ||| || ||||| | || | | || || || ||||| ||| | || Sbjct 11474 AGCGCCCAGTGC-GCTTTCTTCTTCACACAC-GGAATCGTATCGATGGCACGCAGCAGGT 11531 Query 252074 AGTTCCGCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAAT 252133 || | ||| | | |||| |||| || |||| || || || |||| |||||| | Sbjct 11532 GGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAGCAGCGAATACACCTCCGAGT 11591 Query 252134 GGATGGATTCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTT 252193 ||||| ||| || |||||| || | ||||| || || || | |||| Sbjct 11592 GGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCCGGCACCTGCACTT 11651 Query 252194 CCGTGGAAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGC 252253 | || ||||| | || | |||||| |||| ||||| |||||| | || |||||| Sbjct 11652 CATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAAGG 11711 Query 252254 CAAGAATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAA 252313 | || | | |||||||||| ||||| | ||| | || || | |||||| | Sbjct 11712 CCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGC---CCAGTCCTTCA 11768 Query 252314 TGTCCTGATTCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACA 252373 ||| || ||| | || || |||||||||| | || | ||||||||||||||| Sbjct 11769 GGTCGTGCGCCAGGTCCAGCTCCTCGGCCGTCCAGAACGAGGCCTCCGCCTTCTTGTACA 11828 Query 252374 T-TGCGAACACATCAGGGTACTTGATTGGGAA-AGCA 252408 | ||| |||| || | | || ||| ||||| |||| Sbjct 11829 TCTGC-CACACGTCGTGCTCCTGGATCGGGAACAGCA 11864 >seq58 Length=62634 Score = 105 bits (116), Expect = 1e-17 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 ||||| || || || |||||||||| || || || | ||||||||||| |||||| Sbjct 52439 AAGGTGGCACAATTGGCTGGTTATGTGTCAGAGCACTCCGCGTACCATCACGGCGAGCAG 52380 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 ||| ||||||| || || |||||| ||||||| ||| || || |||||||| || Sbjct 52379 AGTTTGCAGGGCTGTATCGTCAACATGGCTCAGGACTTTGTCGGAAGCAACAACATCCAC 52320 Query 218776 TTGCTGCTCCCCAA-CGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGAT 218826 | ||| || |||| ||||||||| ||| | ||| | |||| || |||||| Sbjct 52319 CTCCTG-TCGCCAATCGGTCAGTTCGGTACGCGTTTGATGGGCGGCAAGGAT 52269 >seq290 Length=37095 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || |||||||| || || |||||||||||||| || ||||||| || || ||||| | Sbjct 19057 ATCCGCGGTCTCTCGGGCGGCCAGAAGGTCAAGCTCGTCATCGCTGCTGCCATGTGGAAC 19116 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGC 280832 | || ||| || | || || || ||||| || ||||| ||||||||| | |||||| Sbjct 19117 CGTCCGCACTTGTTGGTGCTGGATGAGCCGACGAACTACTTGGACCGCGCGGCGCTGGGC 19176 Query 280833 GCTCTG 280838 || ||| Sbjct 19177 GCGCTG 19182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027712562153994