Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1023 367 2e-96 seq584 351 2e-91 seq7744 302 8e-77 >seq1023 Length=18726 Score = 367 bits (406), Expect = 2e-96 Identities = 979/1487 (66%), Gaps = 62/1487 (4%) Strand=Plus/Plus Query 243775 CAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAG 243834 || ||||||||||||||||||||| || | |||||||| || |||||| | ||| || Sbjct 2207 CATGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAG 2266 Query 243835 CTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTG 243894 ||| | || | |||||| | | || |||||| ||||| ||||| Sbjct 2267 CTTGCTGATGGTC------GGGTCGGCGATGTG------GATGTTGAGCGACTGACTCTG 2314 Query 243895 GTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATA 243954 | | | | | | || || || | || | | | ||||||| ||||| | Sbjct 2315 GCAAATGTACGCACCGCGGTCGGCCGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCCA 2374 Query 243955 CGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCC 244014 | |||||||||| | ||||| ||| || |||| | | | || ||||||||| ||||| Sbjct 2375 CACCGTCTTGTACTTCTCCTTGACGTGGTCCGGGATCGCCTTGACGTTCTGCACGGAGCC 2434 Query 244015 CTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTC---CAG 244071 ||| | | || |||| |||||| || |||| | ||| | |||| ||| Sbjct 2435 GCTGTCGTTCAAGATCTGGTTGCGCACGTCCGGCGTCCAGATGCCGA---GCTCGATCAG 2491 Query 244072 CGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTA 244131 | ||| | ||||| | |||| || | | |||||||| | |||||| ||||| | ||| Sbjct 2492 CTCCTTCATCAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCGGCGGTTGTA 2551 Query 244132 GAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGC 244191 | |||| || ||||||||| ||| |||| || || ||||| |||||| || Sbjct 2552 CATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAAGC 2611 Query 244192 AGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGAGTC 244250 ||||||||||| | ||||||||| ||| | | |||||| | ||| || || Sbjct 2612 CGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGGAGTCCGTGCTT---GATCACGTCCTC 2668 Query 244251 --TGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTC 244308 ||||| ||||| |||||| ||||| | || | | || |||||||||||| Sbjct 2669 CTTGAGCGTAGCCCAGTTCCACATACCCGA-----CGACGGGGT-GACGCCCCACATGTC 2722 Query 244309 AAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCG 244368 ||||| | | |||||||| |||| ||||| | | ||| ||| || ||| Sbjct 2723 GAACTGGAAGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGTTC 2782 Query 244369 CTGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCT 244427 || ||| | || || | | || | ||||||| ||||||||||||||||||| ||| Sbjct 2783 CTTGGCGATCTC-CATCGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCT 2841 Query 244428 TGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGG 244487 |||| | || |||||||| ||| ||| | | | ||| | || || |||| | Sbjct 2842 TGTTGAGCTCCCGGGCCTTCTCGCTCTCGAACGCGTAGTTCATGAGGATAAACGCGTCCG 2901 Query 244488 CCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA---GCGCATGGCTT 244544 | || ||||| ||||| || |||||||| | ||| ||| ||||||| |||| || | Sbjct 2902 CGAGGCCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGACTTGCGC---GCCT 2958 Query 244545 CGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA--TGCG 244602 || ||||||||| ||||| ||||||| |||||||| | ||||||||||| || | || Sbjct 2959 CGATCACGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGACCACCTTCG 3018 Query 244603 GACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCT 244662 || || || | ||| ||| | | | |||| |||| Sbjct 3019 --TCACTTCATACAACTTCTGGTAGTTGAAAAC-------TCCT------------TCCT 3057 Query 244663 -CACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGG 244721 ||| |||| || || || |||| |||||| || |||||||| || | | Sbjct 3058 CCACGAACTTAGGCAGCGCCACAGACGCCAAGTTGCACACAGCCACCTCGTCTGGCGACG 3117 Query 244722 TGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGAT 244781 |||||| | | ||| ||| | ||| ||| | ||| ||||| |||| ||| || | Sbjct 3118 TGTACTCCATCACCTCACAGCATAAGTTGCTGGAGCGGATCGTGCCGAGGTTCTGCTGGT 3177 Query 244782 TGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGG 244841 | |||||| |||| ||||||||||| | ||| |||||| | || ||||||| ||||| Sbjct 3178 TCGACTTGCGGTTGGCCGCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCGATCTGGG 3237 Query 244842 CGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTG 244901 || | | | | | ||| || | | || |||| |||| |||| || ||||| | Sbjct 3238 CGTCCAATATGGCGAACCACAGCTGCTGGGCGTTGATCGTCTTGCGGGCGCGTCCCTCCG 3297 Query 244902 CCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGC 244961 |||||| || ||||||||||| ||| ||||||| ||| | || || ||| Sbjct 3298 TCTCGTACTTTTCATAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAGTCCAGGGG 3357 Query 244962 ACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGT 245021 | ||||| | ||||||||||| ||| | | | ||||||| |||||| || | Sbjct 3358 CCTCGTTAGGGCAAAAGAGACTCCACTTGCCATTGGCTTCCACCCTCTTCATGAACAGAT 3417 Query 245022 CGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCT 245081 | || | ||| ||||| | ||| ||||| | | | ||| || ||| ||||| Sbjct 3418 CAGGCACCCAAAGGGCGTAGAACAGGTCGCGAGCGCGGTGCAACTCGTTGCCGTGGTTCT 3477 Query 245082 TCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGG 245141 | | || ||||| || || || || || ||||||| ||||||| |||| |||| || Sbjct 3478 TACGGAGGTCCAAGAACTCGAACACATCTGCGTGCCAAGGCTCCAAATAGATGGCGAAGG 3537 Query 245142 CGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCA 245201 ||| |||||| || ||||||||||| || | || |||| || | |||| Sbjct 3538 AGCCCTTACGCTTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCA 3597 Query 245202 GGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAG 245248 | | || | ||||| || || |||||| ||||| ||||||| Sbjct 3598 GCATGGGGATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGTAG 3644 >seq584 Length=26749 Score = 351 bits (388), Expect = 2e-91 Identities = 543/769 (71%), Gaps = 21/769 (3%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || | || ||| | ||| ||||||||||||||| || ||| |||||| || Sbjct 11854 GATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCTCGTTCTGGACGGC 11795 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 ||||||| | |||||||| | ||| | | ||||| | ||| | || ||||| Sbjct 11794 CGAGGAGCTGGACCTGGCGCACGACCTGAAGGACTGGGCGAACCTGACGGACAACGAGCG 11735 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 ||| ||| |||| || | |||||||||||||| ||| |||||||| || || ||||| Sbjct 11734 GTTCTTCATCAAGCACGTGCTGGCCTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAA 11675 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 |||||||| | |||| || || |||||| ||||| |||||||||||||| || Sbjct 11674 CCTGGCCATGAACTTCAGCAATGAAGTGCAGGTGCCGGAGGCCCGCTGCTTCTACGGTTT 11615 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTA 42580 |||||| ||||| |||||| | ||||| |||||||| | ||||||| ||||||| Sbjct 11614 CCAGATCGCCATCGAGAACATCCACTCGGAGGTGTATTCG---CTGCTCATTGACACGTA 11558 Query 42581 CATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCAT 42640 |||| |||| | ||| || ||| | ||||| || ||||| || || | Sbjct 11557 CATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGATACGATTCCGTGTGT 11498 Query 42641 CAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGA-----GAGTCCCGACGCAACGTTC 42695 |||||||| ||| ||||||||||||| ||| ||| |||| || || | | | Sbjct 11497 GAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTGTCGTCGTACC---C 11441 Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 | ||| | || | || || | |||| ||||||||||||||||||||| | ||| | Sbjct 11440 G--GAGCGCGTGCTGGCGTTCGCAACCGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGC 11383 Query 42756 TCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 || ||||||||||||||| || || || ||||| || || | |||||||||||| || Sbjct 11382 TCGATCTTCTGGCTCAAGAAGCGCGGCCTC-ATGCCTGGCCTGAGCTTCTCGAACGAGCT 11324 Query 42815 CATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCT 42874 |||||| | |||||||| |||| | |||||| || |||||| ||| ||| | | || Sbjct 11323 GATCAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTC---CAAGCT 11267 Query 42875 CAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGA 42934 | |||||| || || || || | | ||| | || || ||| |||||| Sbjct 11266 GGTGAACAAGCTGCCGGAGAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGACGATCGA 11207 Query 42935 GAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCAT 42994 | | |||||| | | ||||| || ||| ||| ||||||||||| | ||||| Sbjct 11206 GCACGAGTTCGTGCGTGACTCGCTCCCTGTGGAGCTGATCGGCATGAACTCGGGGCTCAT 11147 Query 42995 GTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGT 43043 |||| | |||||| ||| ||| ||||||| ||| |||||| | ||||| Sbjct 11146 GTGCCAATACATCGAGTTCGTGGCCGACCGTCTGCTGTGCTCGCTGGGT 11098 >seq7744 Length=2697 Score = 302 bits (334), Expect = 8e-77 Identities = 416/576 (72%), Gaps = 18/576 (3%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || | || ||| | ||| ||||||||||||||| || ||| |||||| || Sbjct 1279 GATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCTCGTTCTGGACGGC 1338 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 ||||||| | |||||||| | ||| | | ||||| | ||| | || ||||| Sbjct 1339 CGAGGAGCTGGACCTGGCGCACGACCTGAAGGACTGGGCGAACCTGACGGACAACGAGCG 1398 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 ||| ||| |||| || | |||||||||||||| ||| |||||||| || || ||||| Sbjct 1399 GTTCTTCATCAAGCACGTGCTGGCCTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAA 1458 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 |||||||| | |||| || || |||||| ||||| |||||||||||||| || Sbjct 1459 CCTGGCCATGAACTTCAGCAATGAAGTGCAGGTGCCGGAGGCCCGCTGCTTCTACGGTTT 1518 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTA 42580 |||||| ||||| |||||| | ||||| |||||||| | ||||||| ||||||| Sbjct 1519 CCAGATCGCCATCGAGAACATCCACTCAGAGGTGTATTC---GCTGCTCATTGACACGTA 1575 Query 42581 CATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCAT 42640 |||| |||| | ||| || ||| | ||||| || ||||| || || | Sbjct 1576 CATCAAGGATGCAACGGAGAAGGACCACCTGCTGCGTGCCATCGATACGATCCCGTGTGT 1635 Query 42641 CAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGA-----GAGTCCCGACGCAACGTTC 42695 |||||||| ||| ||||||||||||| ||| ||| |||| || || | | | Sbjct 1636 GAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTGTCGTCGTACC---C 1692 Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 | ||| | ||| | || || | || || ||||||||||||||||||||| | ||| | Sbjct 1693 G--GAGCGTCTGCTGGCGTTCGCAGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGC 1750 Query 42756 TCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||||||||||||||| || || || ||||| || || | |||||||||||| || Sbjct 1751 TCCATCTTCTGGCTCAAGAAGCGCGGCCTC-ATGCCTGGCCTGAGCTTCTCGAACGAGCT 1809 Query 42815 CATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGC 42850 |||||| | |||||||| |||| | |||||| || Sbjct 1810 GATCAGCCGTGACGAGGGCATGCACACGGACTTCGC 1845 Score = 127 bits (140), Expect = 4e-24 Identities = 144/191 (75%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 42954 TCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTAC 43013 ||||| || ||| ||| ||||||||||| | ||||||||| |||||||| ||| | Sbjct 2074 TCGCTCCCTGTGGAGCTGATCGGCATGAACTCGGGGCTCATGTGCCAGTACATCGAGTTC 2133 Query 43014 GTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCC--TCTACAACACGCCGTGCC 43071 || ||||||| ||| |||| | | ||||| | | || |||||||| | || Sbjct 2134 GTGGCCGACCGTCTGCTGTACTCGCTGGGTGT--GTCGAAGATCTACAACGTAAAGAACC 2191 Query 43072 CCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 43131 | ||||||| ||||| | |||||| || |||||||||||||||||||||||||||||| Sbjct 2192 CGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCG 2251 Query 43132 TCGCCGACTAC 43142 | | ||| ||| Sbjct 2252 TGGGCGAGTAC 2262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944227838799840