Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1050 102 6e-17 seq1059 96.9 3e-15 seq93 96.9 3e-15 seq671 93.3 3e-14 >seq1050 Length=18215 Score = 102 bits (112), Expect = 6e-17 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||||||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 5224 CCGCCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-GCT 5166 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || || ||||||||||| || ||| Sbjct 5165 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 5106 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| ||| || ||||| Sbjct 5105 GATGCCCTCCTTGTCCTGAATCTTCTGCTT 5076 Score = 102 bits (112), Expect = 6e-17 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||||||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 5452 CCACCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-GCT 5394 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || || ||||||||||| || ||| Sbjct 5393 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 5334 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| ||| || ||||| Sbjct 5333 GATGCCCTCCTTGTCCTGAATCTTCTGCTT 5304 >seq1059 Length=18192 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || |||||||| || ||||||||||||||||| |||||||| || | Sbjct 11297 ACCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCG- 11355 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || |||| |||| ||||||||||| || |||||||||||||| || Sbjct 11356 AAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 11410 >seq93 Length=57835 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| |||||||||||||||||| || || Sbjct 55086 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTC-GCT 55028 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||| || || ||||| |||||||| || ||| Sbjct 55027 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 54968 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || |||||||||| || |||||||| Sbjct 54967 GATGCCCTCTTTGTCCTGGATCTTTTGCTT 54938 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| |||||||||||||||||| || || Sbjct 55314 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTC-GCT 55256 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||| || || ||||| |||||||| || ||| Sbjct 55255 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 55196 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || |||||||||| || |||||||| Sbjct 55195 GATGCCCTCTTTGTCCTGGATCTTTTGCTT 55166 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || ||||||||||| || ||||| |||||||||||||||||| || || | || || Sbjct 55533 AGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTC-GCTCAGCGTGCG 55475 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| || | |||||||| || || ||||| |||||||| || ||| | || ||| Sbjct 55474 ACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTC 55415 Query 34029 TTTGTCCATAATTTTTTGCTT 34049 ||||||| || |||||||| Sbjct 55414 TTTGTCCTGGATCTTTTGCTT 55394 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| |||||||||||||||||| || || Sbjct 54858 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTC-GCT 54800 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||| || || ||||| |||||||| || ||| Sbjct 54799 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 54740 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| || |||||||| Sbjct 54739 GATGCCCTCCTTGTCCTGGATCTTTTGCTT 54710 >seq671 Length=24399 Score = 93.3 bits (102), Expect = 3e-14 Identities = 191/277 (69%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 39936 GCCGCGGGCATGGACCTGAGGAGCGCATACGACTACGTGATTCCTCGCAA-CGACCGAAT 39994 |||||||| |||||||| | || |||||| |||||| || ||| || | || Sbjct 16587 GCCGCGGGTCTGGACCTGTCGGCTGCTTACGACGCCGTGATCCC-CGCGGGCGGC--AAG 16643 Query 39995 G--CTGGTGAAGACGGACATTGCTCTACAAC-TACCCAAAGAGTGCTACGGTAGAATAGC 40051 | || || ||||||||| | | || | | ||||| | | ||||||| | | || Sbjct 16644 GGCCTCGTCAAGACGGACCTGG-TCATCGCCGTACCCGACGGCTGCTACGCGCGCGTGGC 16702 Query 40052 GCCTCGGTCCGGACTGGCGCTGAAGCACGGTATCGACATTTCGGCCGGCGTCATAGATTC 40111 ||| || |||||||| ||||| ||||| ||||||| |||||||| || || | Sbjct 16703 GCCGCGCTCCGGACTCGCGCTCAAGCAGTTCATCGACACGGGCGCCGGCGTGATCGACGC 16762 Query 40112 TGACTACACGGGCAACGTGGGCGTGGTGATGGTGAACAACGGAGACGAGGCCTTTGTGGT 40171 |||||| ||||||||||||||| | || | ||| ||| | ||||| ||| || Sbjct 16763 CGACTACCGCGGCAACGTGGGCGTGATCCTGTTCAACCACGCGGCCGAGGACTTCCCCGT 16822 Query 40172 GCTTCGAGGAGACCGCATCGCCCAGCTCATACTGGAG 40208 || ||||||||| | || |||||||| || ||| Sbjct 16823 CAAGCGCGGAGACCGCGTGGCGCAGCTCATCCTCGAG 16859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397016747006068