Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14]
9,434 sequences; 74,863,594 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq93 134 3e-26
seq1050 123 6e-23
seq1009 111 4e-19
>seq93
Length=57835
Score = 134 bits (148), Expect = 3e-26
Identities = 172/233 (74%), Gaps = 3/233 (1%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| |||||||| || | || || || || | ||| || || || || || ||||
Sbjct 54862 CATG-CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGT 54804
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
|| |||||||| ||||| || | || || || ||||||||||||||||| || |
Sbjct 54803 CGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAG 54744
Query 288362 CTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420
||||| || || || |||||||| ||| |||| ||||| || || || || ||
Sbjct 54743 GCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTG-ACGTTGTCGATCGAGTCCGACGGC 54685
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||||||||||||||| || ||||| ||||| ||||| ||||||||
Sbjct 54684 TCCACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 54632
Score = 131 bits (144), Expect = 4e-25
Identities = 171/233 (73%), Gaps = 3/233 (1%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| |||||||| || | || || || || | ||| || || || || || ||||
Sbjct 55090 CATG-CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGT 55032
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
|| |||||||| ||||| || | || || || ||||||||||||||||| || |
Sbjct 55031 CGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAG 54972
Query 288362 CTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420
||||| || ||||| |||||||| ||| |||| ||||| || || || || ||
Sbjct 54971 GCGGGATGCCCTCTTTGTCCTGGATCTTTTGCTTG-ACGTTGTCGATCGAGTCCGACGGC 54913
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || |||||||||||||| || ||||| ||||| || || ||||||||
Sbjct 54912 TCCACGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 54860
Score = 131 bits (144), Expect = 4e-25
Identities = 171/233 (73%), Gaps = 3/233 (1%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| |||||||| || | || || || || | ||| || || || || || ||||
Sbjct 55318 CATG-CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGT 55260
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
|| |||||||| ||||| || | || || || ||||||||||||||||| || |
Sbjct 55259 CGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAG 55200
Query 288362 CTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420
||||| || ||||| |||||||| ||| |||| ||||| || || || || ||
Sbjct 55199 GCGGGATGCCCTCTTTGTCCTGGATCTTTTGCTTG-ACGTTGTCGATCGAGTCCGACGGC 55141
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || |||||||||||||| || ||||| ||||| || || ||||||||
Sbjct 55140 TCCACGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 55088
Score = 127 bits (140), Expect = 5e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| || || | || || || || | ||| || || || || || ||||||
Sbjct 55543 TCCACCACGAAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 55484
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
|||||||| ||||| || | || || || ||||||||||||||||| || | ||
Sbjct 55483 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 55424
Query 288366 GATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424
||| || ||||| |||||||| ||| |||| ||||| || || || || || || |
Sbjct 55423 GATGCCCTCTTTGTCCTGGATCTTTTGCTTG-ACGTTGTCGATCGAGTCCGACGGCTCCA 55365
Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || |||||||||||||| || ||||| ||||| || || ||||||||
Sbjct 55364 CGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 55316
>seq1050
Length=18215
Score = 123 bits (136), Expect = 6e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| || || | || || || || | ||| || || ||||| || ||||||
Sbjct 5453 TCCACCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 5394
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
|||||||| ||||| || | || || || |||||||| || ||||| || ||
Sbjct 5393 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 5334
Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
||| || || || ||||| || ||| |||||||| || || || || || || ||
Sbjct 5333 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 5274
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||||||||| ||||| || ||||| ||||||||||| ||||||||
Sbjct 5273 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 5226
Score = 122 bits (134), Expect = 2e-22
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || |||||| |||||||| ||||| || | || || || ||||||
Sbjct 5188 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 5129
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || ||||| || ||||| || || || ||||| || ||| ||||||||
Sbjct 5128 ATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG 5069
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || || || || || || ||||||||||| ||||| || ||||| |||||||||
Sbjct 5068 TCAATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACG 5009
Query 288463 AATATCTGCATT 288474
|| |||||||||
Sbjct 5008 AAAATCTGCATT 4997
>seq1009
Length=18926
Score = 111 bits (122), Expect = 4e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| || ||||| | |||||||| ||||| || | || || || |||||||||
Sbjct 8116 TTCTGGATGTTGTAGTCCGATAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 8175
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405
|| ||||| || | ||||| || || || |||||||||||| || || || ||
Sbjct 8176 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 8235
Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465
|| ||| || || || || |||||||| ||||| || ||||| ||||| || ||
Sbjct 8236 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 8295
Query 288466 ATCTGCATTAT 288476
|||||||| ||
Sbjct 8296 ATCTGCATGAT 8306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179511811486252
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |