Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq93 134 3e-26 seq1050 123 6e-23 seq1009 111 4e-19 >seq93 Length=57835 Score = 134 bits (148), Expect = 3e-26 Identities = 172/233 (74%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || || || | ||| || || || || || |||| Sbjct 54862 CATG-CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGT 54804 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || |||||||| ||||| || | || || || ||||||||||||||||| || | Sbjct 54803 CGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAG 54744 Query 288362 CTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || || || |||||||| ||| |||| ||||| || || || || || Sbjct 54743 GCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTG-ACGTTGTCGATCGAGTCCGACGGC 54685 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 54684 TCCACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 54632 Score = 131 bits (144), Expect = 4e-25 Identities = 171/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || || || | ||| || || || || || |||| Sbjct 55090 CATG-CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGT 55032 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || |||||||| ||||| || | || || || ||||||||||||||||| || | Sbjct 55031 CGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAG 54972 Query 288362 CTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || ||||| |||||||| ||| |||| ||||| || || || || || Sbjct 54971 GCGGGATGCCCTCTTTGTCCTGGATCTTTTGCTTG-ACGTTGTCGATCGAGTCCGACGGC 54913 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||||||||| || ||||| ||||| || || |||||||| Sbjct 54912 TCCACGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 54860 Score = 131 bits (144), Expect = 4e-25 Identities = 171/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || || || | ||| || || || || || |||| Sbjct 55318 CATG-CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGT 55260 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || |||||||| ||||| || | || || || ||||||||||||||||| || | Sbjct 55259 CGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAG 55200 Query 288362 CTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || ||||| |||||||| ||| |||| ||||| || || || || || Sbjct 55199 GCGGGATGCCCTCTTTGTCCTGGATCTTTTGCTTG-ACGTTGTCGATCGAGTCCGACGGC 55141 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||||||||| || ||||| ||||| || || |||||||| Sbjct 55140 TCCACGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 55088 Score = 127 bits (140), Expect = 5e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || || || | ||| || || || || || |||||| Sbjct 55543 TCCACCACGAAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 55484 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 |||||||| ||||| || | || || || ||||||||||||||||| || | || Sbjct 55483 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 55424 Query 288366 GATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 ||| || ||||| |||||||| ||| |||| ||||| || || || || || || | Sbjct 55423 GATGCCCTCTTTGTCCTGGATCTTTTGCTTG-ACGTTGTCGATCGAGTCCGACGGCTCCA 55365 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || |||||||||||||| || ||||| ||||| || || |||||||| Sbjct 55364 CGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 55316 >seq1050 Length=18215 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || || || | ||| || || ||||| || |||||| Sbjct 5453 TCCACCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 5394 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 |||||||| ||||| || | || || || |||||||| || ||||| || || Sbjct 5393 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 5334 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || ||||| || ||| |||||||| || || || || || || || Sbjct 5333 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 5274 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 5273 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 5226 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| |||||||| ||||| || | || || || |||||| Sbjct 5188 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 5129 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || ||||| || || || ||||| || ||| |||||||| Sbjct 5128 ATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG 5069 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || || || || ||||||||||| ||||| || ||||| ||||||||| Sbjct 5068 TCAATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACG 5009 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 5008 AAAATCTGCATT 4997 >seq1009 Length=18926 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | |||||||| ||||| || | || || || ||||||||| Sbjct 8116 TTCTGGATGTTGTAGTCCGATAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 8175 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || | ||||| || || || |||||||||||| || || || || Sbjct 8176 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 8235 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || ||| || || || || |||||||| ||||| || ||||| ||||| || || Sbjct 8236 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 8295 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 8296 ATCTGCATGAT 8306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179511811486252