Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq949 116 8e-21 seq58 93.3 9e-14 seq7744 91.5 3e-13 >seq949 Length=22177 Score = 116 bits (128), Expect = 8e-21 Identities = 658/1040 (63%), Gaps = 43/1040 (4%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 17845 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAG 17904 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 17905 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 17964 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || ||| | || | |||| | ||||| |||| ||| || || || Sbjct 17965 CTTCCACACCTGACCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 18024 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTG-------GAGTTCAGCGATACCT 333546 || || ||||| || || | |||| | || | | ||| || || ||| Sbjct 18025 CTTACCGGCACCGTTGGGACCAAGCACAGCGATACGGCTCGACAGAGCGCA-CGTCACCG 18083 Query 333547 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 333605 | || |||| || | | | ||| ||||| || |||| | | | || Sbjct 18084 AGATGTT---GTTGATCGACG----GCTTTGGGGTACCAGGGTACTGGTA-CGAGCAGTT 18135 Query 333606 CGT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 333664 || || ||||||| |||| |||| | | ||||| || ||||| || Sbjct 18136 GGTCAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCCGG 18195 Query 333665 GAAC-----TTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGA 333719 |||| | ||||| ||| || ||| || ||||||| | | ||||| Sbjct 18196 GAACGTGAACTTCACGTTGTC--CGACTC---CAGCTCGTAGTAGGCCTTGGCCTCGGGC 18250 Query 333720 CGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCG 333779 || || ||||| || || || ||||| || |||||||||| || | ||| Sbjct 18251 TTCTGCTCAACGAAGAGAGAAAGGTTGCCCTTATAGATCTTCAGCTTACGG---GTCTCG 18307 Query 333780 TAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACG 333839 || ||||| || ||| || || ||||||||| || |||||||| ||||| || | | Sbjct 18308 TAGTGGATGATGTTGGTACACACGTTGTCGAGGAAGCCAGAGTCGTGGGACACCATGATG 18367 Query 333840 CACGAAAC-GTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACA 333896 | | || ||| | | | | ||||||| ||| || ||||| ||||| ||| Sbjct 18368 GAGGTGACAGTCGGCACGCTCG-TCAGGTAGTTC--TCAAGCCAGGCGACGTTCTTGACA 18424 Query 333897 GAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGT 333956 | ||||| |||||||| ||||| || || | | || ||||| ||||| ||||| Sbjct 18425 TCCAAGTGGTTCGTCGGCTCATCAAGCAGCAGAATGTCAGCCTTCAGCAGCATAGCACGC 18484 Query 333957 GCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGC 334016 | || |||||||||| ||||| || || ||||| | | | | || || | Sbjct 18485 GACAGCTCGAGTTTCATCTTCCAACCACCCGAAAGGGAGCCCACGGCCTGAGCCTGCATC 18544 Query 334017 TCAATATCAAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTT 334076 || ||||| || | |||| | | || | |||| | | Sbjct 18545 TCGGCGGTGAAGCCGACATCAGCCAGAGCGTCCTCAACCTCCTTGCGAG------GGGTG 18598 Query 334077 TCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGACCCG 334136 ||||| | | |||||| | |||||||| | | | | | || || || | Sbjct 18599 TCCTTCAGGTCGTCATCAATCAGGATGAAGTCGACCACCGAAAGCTCAGCCTCCGAAGCC 18658 Query 334137 TCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGC 334196 | || | ||| || ||| | |||| |||| | ||| |||||| || |||||| Sbjct 18659 TGCAGGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCCTTGCTGGGGAAGCCCTCAAGC 18718 Query 334197 TGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGA 334256 || ||||| |||| ||||||||||| || || ||||| ||||| || || |||||| Sbjct 18719 TGGCCGTTGGCAATGGCGCGCATCAGCGTCGACTTACCACAACCGTTGGGACCGCACAGA 18778 Query 334257 CCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCA 334316 ||||| |||| |||||||| || | || | |||||||| ||||| | ||||| Sbjct 18779 CCGTAACGGTGGCCACGCTTGAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACCACCG 18838 Query 334317 TATGCCAGAGAAAATTCACA 334336 || || || || || || || Sbjct 18839 TAAGCGAGCGAGAACTCGCA 18858 >seq58 Length=62634 Score = 93.3 bits (102), Expect = 9e-14 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 297434 TTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAAC 297493 || ||||||||||| || || || || |||||| || ||| ||| | || ||||||| Sbjct 52240 TTCGTGAAAATATAACGAGCGCTGGCTGCATCCTTGCCGCCCATCAAACGCGTACCGAAC 52299 Query 297494 TGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTC 297553 || || ||| ||| || |||||| |||||||||||| | ||||| || | ||| Sbjct 52300 TGACCGATTGGCGACAGGAGGTGGATGTTGTTGCTTCCGACAAAGTCCTGAGCCATGTTG 52359 Query 297554 ACGATGGTCCCTTGCAGA-GATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTA 297612 ||||| || |||| | ||| ||||| || || || ||| ||||||| || || Sbjct 52360 ACGATACAGCCCTGCAAACTCTGC-TCGCCGTGATGGTACGCGGAGTGCTCTGACACATA 52418 Query 297613 ACCGCTGAACTGTGCAACCTTCA 297635 ||| || ||||| ||||||| Sbjct 52419 ACCAGCCAATTGTGCCACCTTCA 52441 >seq7744 Length=2697 Score = 91.5 bits (100), Expect = 3e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || ||||||||||| | |||||| | ||||||||||| ||||| |||||||| | Sbjct 2088 GCTGATCGGCATGAACTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCT 2147 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 | | |||| ||| ||| | |||||| |||||||| || | || ||||| Sbjct 2148 GCTGTACTCGCTGGGTGTGTCGAAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGA 2207 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | || ||||| || || || || ||||| ||||| ||||| || Sbjct 2208 CATGATCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 2252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102746691447900