Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq7744 154 2e-32 seq584 136 5e-27 >seq7744 Length=2697 Score = 154 bits (170), Expect = 2e-32 Identities = 196/267 (73%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||||||| ||| || || |||||||||| ||| || |||||||| || |||||| Sbjct 1827 CCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTC 1768 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| || | || || || |||||||||||||| ||||||||| |||||| Sbjct 1767 TTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACAGCTGCGAAC 1708 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACT-TTGTGTCAAACCACTTCATCGCCCACTG 126243 || | |||||||| | | || || ||| | ||| ||||||| | |||||| || Sbjct 1707 GCCAGCAGACGCTCCGGGTACGA-CGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTG 1649 Query 126244 CGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 126303 ||| || |||| | |||||||| || | ||| || | || | | ||| || | Sbjct 1648 CGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGT 1589 Query 126304 TGGATCTTTGATGTACTTATCTATGAG 126330 || ||| ||||||||| | || ||||| Sbjct 1588 TGCATCCTTGATGTACGTGTCAATGAG 1562 >seq584 Length=26749 Score = 136 bits (150), Expect = 5e-27 Identities = 192/267 (72%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||||||| ||| || || |||||||||| ||| || |||||||| || |||||| Sbjct 11306 CCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTC 11365 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| |||| || || || |||||||||||||| |||||||| |||||| Sbjct 11366 TTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACGGTTGCGAAC 11425 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACT-TTGTGTCAAACCACTTCATCGCCCACTG 126243 || | | ||||| | | || || ||| | ||| ||||||| | |||||| || Sbjct 11426 GCCAGCACGCGCTCCGGGTACGA-CGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTG 11484 Query 126244 CGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 126303 ||| || |||| | |||||| | || | ||| || | || | | ||| || | Sbjct 11485 CGCTTTCTTCTTCACACACGGAATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGT 11544 Query 126304 TGGATCTTTGATGTACTTATCTATGAG 126330 | ||| ||||||||| | || ||||| Sbjct 11545 CGCATCCTTGATGTACGTGTCAATGAG 11571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597283157076720