Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq2494 136 2e-27 >seq2494 Length=8003 Score = 136 bits (150), Expect = 2e-27 Identities = 384/587 (65%), Gaps = 12/587 (2%) Strand=Plus/Minus Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 || || |||||||||||||| || ||| || || ||| | |||||| || | Sbjct 4395 CGTGTGGTGGAGATCTACGGCCCCGAGAGCTCCGGCAAGACGACGTTGGCACTGAGCTGC 4336 Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCC---GCCTACATCGACGCCGAACATTCT 66089 | || | || |||||| | | ||| | | |||| ||||||||| ||||| | Sbjct 4335 ATTGCTGAGGCTCAGAAGACGGAGGGCGGAGTCTGCGCCTTCATCGACGCAGAACACGCC 4276 Query 66090 CTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAG 66149 | ||| | | |||||| ||| || || || || | ||| || || |||| Sbjct 4275 ATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGACATTGACGCGCTGTACGTCTCGCAG 4216 Query 66150 CCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTT 66209 || ||| | ||||| | || |||||||||| ||| ||| ||| ||| || | ||| Sbjct 4215 CCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGACACGCTCATCAGGTCGGGAGCGGTG 4156 Query 66210 TCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGAC 66269 | || | || ||||| |||||| || ||||||||||| |||||||| || || || Sbjct 4155 GACCTCGTGGTGCTGGACAGTGTGGCAGCGCTGGTGCCGCGTGCGGAGCTGGAGGGTGAA 4096 Query 66270 ATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTG 66329 || || ||| ||| | | ||||| || || || ||| |||||| |||| ||||| Sbjct 4095 ATGGGAGACCAGCAGATTGCACTGCAGGCGCGACTCATGAGTCAGGCGCTGCGAAAGCTC 4036 Query 66330 ACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAG 66389 || || || | ||| ||||| || | | |||| ||| | ||| ||||| Sbjct 4035 ACGGGGTCGCTGTCCAAGTCCAACTGCACCATTATCTTCCTGAACCAGATTCGCCAGAAG 3976 Query 66390 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTC 66449 | || | | | || ||| | |||| || | ||||| | |||||||| | | Sbjct 3975 GTGGGGATCAT---CTTCGGATCTCCTGAGGTTACGTCGGGTGGAACAGCTCTGCGTTAC 3919 Query 66450 TACGCCTCGGTGCGTATGGA---TGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAG 66506 ||||| || || | |||| | |||| || |||| | ||||| ||||| || Sbjct 3918 TACGCGTCTGTAAGGCTGGACATTCGTCGCAAGACGGCCATC---AAGGAGGGCGACCAG 3862 Query 66507 GCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGC 66553 | |||||||||| ||| |||||||| | ||||||||| || || Sbjct 3861 GTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAAGAACAAACTTGC 3815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242442521511128