Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1023 408 4e-109 >seq1023 Length=18726 Score = 408 bits (452), Expect = 4e-109 Identities = 1112/1692 (66%), Gaps = 45/1692 (3%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||||||||| || || ||||| || || ||| ||||| |||| || || ||||| Sbjct 3823 GCCACCCCGACACTTTTTAACGCCGGCACGCCGCGCCCACAACTGTCGTCTTGCTTCCTA 3764 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | | | |||||| || || |||| ||||| | ||| | ||||| Sbjct 3763 TTGGCCATGCAAGACGACTCAATTGAAGGCATTTACGACACGTTAAAGCAATGTGCCTGT 3704 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| |||| || || || || || |||||| | ||| || | || |||| | Sbjct 3703 ATCTCTAAATGGGCCGGAGGTATTGGCATCAGTATGCACAACATCCGAGCCACCAACAGC 3644 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||||| || || || ||| | ||||| ||| || |||| ||||| ||||| || ||| Sbjct 3643 TACATCCGAGGCACGAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAAC 3584 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || | ||||| |||||||||||||| || || | | | ||||| || ||||| ||||| Sbjct 3583 GACACCGCGCGGTACGTGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCTTCGCCATCTAT 3524 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | ||||| |||||||| || ||| | ||| | ||||| || ||||||||||||||| Sbjct 3523 TTGGAGCCTTGGCACGCAGATGTGTTCGAGTTCTTGGACCTCCGTAAGAACCACGGCAAC 3464 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | | || | ||||| |||||||| || |||||||| || || || ||||| Sbjct 3463 GAGTTGCACCGCGCTCGCGACCTGTTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAG 3404 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | || || || | |||||||| ||||| || || || || ||||| | Sbjct 3403 AGGGTGGAAGCCAATGGCAAGTGGAGTCTCTTTTGCCCTAACGAGGCCCCTGGACTCTAT 3344 Query 94372 GACGTTTGTGGATCG-CG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 || | ||| || || || || | | | |||| ||||| || |||| | Sbjct 3343 GA--GTGCTGGGGCGACGAATTCGAGGCCCTCTATGAAAAGTACGAGACGGAGGGACGCG 3286 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 || | ||| || | || | |||||||| || |||||| ||| | |||| Sbjct 3285 CCCGCAAGACGATCAACGCCCAGCAGCTGTGGTTCGCCATATTGGACGCCCAGATCGAGA 3226 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 |||| ||||| || |||| ||||||| | | |||| |||||| ||||||||| ||| Sbjct 3225 CGGGAGTGCCCTTTATGTTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACC 3166 Query 94550 TCGGGGTGATCAAGAGCTC---GAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 |||| |||| |||| || | ||| ||| | | ||||| || || || | Sbjct 3165 TCGGCACGATC---CGCTCCAGCAACTTATGCTGTGAGGTGATGGAGTACACGTCGCCAG 3109 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCT 94666 ||||| | |||||||| ||| ||| || | ||| | | |||||| || | Sbjct 3108 ACGAGGTGGCTGTGTGCAACTTGGCGTCTGTGGCGCTGCCTAAGTTCGTGGAGGAAG--G 3051 Query 94667 ACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT-- 94724 | || ||| | | | || | | |||| | ||||| |||| Sbjct 3050 AGTTTTCAACT----------ACCAGAAGTTG--TATGAAGT---GACGAAGG-TGGTCA 3007 Query 94725 -CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 | ||| | |||| ||| |||||| |||| ||||||||| |||||| || | Sbjct 3006 CCCGCAACTTAAACAAGGTCATCGACGTCAACTACTACCCCGTGATCGAGGCGCGCAAGT 2947 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 | ||| || || || |||||||| || ||||||||||| ||||||||||| | | Sbjct 2946 CCAACATGCGTCACCGCCCCATCGGTATTGGCGTCCAGGGCCTCGCGGACGCGTTTATCC 2887 Query 94844 TGATGCGTCTGC-CCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAA 94902 | ||| || | | | ||| | | || || | || |||||| ||||| Sbjct 2886 TCATG-AACTACGCGTTCGAGAGCGAGAAGGCCCGGGAGCTCAACAAGAACATCTTCGAG 2828 Query 94903 AGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCA 94962 | ||| || | || |||||| | || | | | |||| ||| ||| || Sbjct 2827 ACCATCTACTTCGCCGCCATGGAGACGTCGATGGAGATCGCCA---AGGAACTCGGCCCG 2771 Query 94963 CACGAATCGTTCCGCGGATCGCCC-TTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGG 95021 |||| |||||| || |||||| | | | ||||||| || ||||||||| | ||||| Sbjct 2770 TACGAGACGTTCCAGGGCTCGCCCGCTAGCA-AGGGCATCTTCCAGTTCGACATGTGGGG 2712 Query 95022 TGTGA---AGCCCTCGGGTCTGTACGACTGGG--AAGCTCTACGCGCTGATGTTATCAAA 95076 || | | | |||||| ||| |||||| | |||| | | | || || ||||| Sbjct 2711 CGTCACCCCGTCGTCGGGTATGTGGAACTGGGCTACGCTCAAGGAG--GACGTGATCAAG 2654 Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||| | ||| ||||||| |||||||||||||| ||||| |||||||| |||||| Sbjct 2653 CACGGACTCCGCAACTCGCTGCTGGTGGCCCCCATGCCGACGGCTTCCACGGCCCAGATC 2594 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 ||||| ||||||||||| |||| || | ||| |||||| |||||||| | || ||||| Sbjct 2593 CTTGGAAACAACGAGTCTATCGAGCCGTACACGTCCAACATGTACAACCGCCGAGTGCTG 2534 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTG 95256 || || || ||| | || |||||||| |||| | ||| |||| || || | Sbjct 2533 GCTGGAGAGTTCACGATCGTCAACAAGTACCTGATGAAGGAGCTGATCGAGCTCGGCATC 2474 Query 95257 TGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCG 95316 ||| | || ||||| | | || || ||||||||| |||||| || | Sbjct 2473 TGGACGCCGGACGTGCGCAACCAGATCTTGAACGACAGCGGCTCCGTGCAGAACGTCAAG 2414 Query 95317 CAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTG 95376 || ||||| || |||||| | |||||||| |||||||||||| |||| | | Sbjct 2413 GCGATCCCGGACCACGTCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGGCG 2354 Query 95377 ATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNN 95436 | || |||| |||||| |||||| | | ||| |||||||| Sbjct 2353 GTGCTGGACCTGTCGGCCGACCGCGGTGCGTACATTTGCCAGAGTCAGTCGCTCAACATC 2294 Query 95437 NNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAG 95496 || ||||| || | | | || | ||||| ||| ||||||| |||| ||| Sbjct 2293 CACATCGCCGACCCGACCATCAGCAAGCTCACGTCGATGCACTTCTACGCCTGGAAGAAG 2234 Query 95497 GGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACAGTTC 95556 || ||||||||||| ||||| || |||| | || || || ||| |||| ||||| Sbjct 2233 GGGCTCAAGACCGGCATGTACTACATGCGCGGACGCCCGAAAGCCGACGCCATCAAGTTC 2174 Query 95557 GCCCTAGAAAAG 95568 || | || ||| Sbjct 2173 ACCGTGGACAAG 2162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494664859766640