Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq816 102 6e-17 seq1073 95.1 9e-15 >seq816 Length=21980 Score = 102 bits (112), Expect = 6e-17 Identities = 173/248 (70%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCA--CCGCCCC-GTTC 108411 ||||| |||| || ||| | ||| | ||| | ||||||||||| | ||| | | | Sbjct 10439 ACGGCGGGCGCGCACCGGCTCTGGTCACACCGCGGCTACAAGGCCAAGCTGCCGCTGCGC 10498 Query 108412 AGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTG 108471 | |||| || || || ||| |||| |||| || ||||||| ||||| | Sbjct 10499 ATGGTGCTCATG---CTGTGCAACTCGATGGCCTTCGAGGGCACCATCTTCGAGTGGTCG 10555 Query 108472 CTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAAC 108531 | ||| ||| | || ||||||||| ||| ||||||||||||||||| |||||| | | Sbjct 10556 CGCGACCACCGCGTGCACCACAAGGCCTCGGACACGACGGCCGACCCGCACAACTCGGGC 10615 Query 108532 AGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGATC 108591 | || ||| ||||||||| |||| ||| ||||| || |||| || ||||| | Sbjct 10616 CGCGGCCTCTTCTTCTCGCACATGGGCTGGGTCATGGTGCGCAAGCACAAGAACGTGCGC 10675 Query 108592 TCGGCCGG 108599 ||||||| Sbjct 10676 GCGGCCGG 10683 >seq1073 Length=17955 Score = 95.1 bits (104), Expect = 9e-15 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 108453 CACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGC 108512 ||||||| || ||| | ||| ||| | || |||||||||||||| ||||||| || Sbjct 13386 CACCATCTTCCACTGGAGCCGCGACCACCGCGTGCACCACAAGTACTCGGACACGAGCGC 13327 Query 108513 CGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC 108572 |||||| |||||| | | | || |||| ||| ||||| |||| ||||| || | | Sbjct 13326 CGACCCGCACAACTCGGGCCGCGGCTTCTTCTTCGCGCACATGGGCTGGCTGCTGGTCAA 13267 Query 108573 CAAGGACCCCGACGTGATCTCGGCCGG 108599 ||||||||| | |||||| |||||| Sbjct 13266 GAAGGACCCCAAGGTGATCAAGGCCGG 13240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381728904956496