Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7744 125 7e-24 seq93 125 7e-24 seq1050 105 7e-18 seq1009 96.9 3e-15 >seq7744 Length=2697 Score = 125 bits (138), Expect = 7e-24 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 52651 CGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTG 52710 |||| || || |||||| | ||||||||| || | ||||||| ||||||||||||| | Sbjct 2075 CGCTCCCTGTGGAGCTGATCGGCATGAACTCGGGGCTCATGTGCCAGTACATCGAGTTCG 2134 Query 52711 TGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGT 52770 |||| || |||||| || ||| || | | ||| || ||||| || |||| Sbjct 2135 TGGCCGACCGTCTGCTGTACTCGCTGGGTGTGTCGAAGATCTACAACGTAAAGAACCCGT 2194 Query 52771 TTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCG 52830 | || | ||| ||| || ||||| |||||||||||||||||||||||||||| || | Sbjct 2195 TCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTGG 2254 Query 52831 GCGAGTA 52837 ||||||| Sbjct 2255 GCGAGTA 2261 >seq93 Length=57835 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | |||||||| ||||||||||||||||| Sbjct 55087 GCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 55028 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || || | |||| |||||||| ||||| || || Sbjct 55027 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 54968 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| ||||| || | | || | | ||| | || |||||| Sbjct 54967 GATGCCCTCTTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCAC 54908 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || ||||| || || ||||| ||||||||| Sbjct 54907 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 54859 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | |||||||| ||||||||||||||||| Sbjct 55315 GCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 55256 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || || | |||| |||||||| ||||| || || Sbjct 55255 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 55196 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| ||||| || | | || | | ||| | || |||||| Sbjct 55195 GATGCCCTCTTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCAC 55136 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || ||||| || || ||||| ||||||||| Sbjct 55135 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 55087 Score = 122 bits (134), Expect = 9e-23 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||||||| || || |||||| || || || || | Sbjct 55509 GACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCG 55450 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || || || |||||||| ||| ||||| || | Sbjct 55449 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCTTTGTCCTGGATCTTTTGCTTGACG 55390 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | || |||||| || | ||| | ||| || || ||||| || || Sbjct 55389 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTC 55330 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 55329 ACAAAGATCTGCATG 55315 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | |||||||| ||||||||||||||||| Sbjct 54859 GCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 54800 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || || | |||| |||||||| ||||| || || Sbjct 54799 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 54740 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| ||||| || | | || | | ||| | || |||||| Sbjct 54739 GATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCAC 54680 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | ||| || || ||||| || || || || |||||||| Sbjct 54679 GTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 54632 >seq1050 Length=18215 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||| || | || | | |||||||| || |||||||||||||| Sbjct 5225 GCCGCCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 5166 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || |||| |||| || ||||| ||||| || || Sbjct 5165 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 5106 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| || || || || | | || | | ||| | || |||||| Sbjct 5105 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATCGAGTCCGACGGCTCCAC 5046 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | || || || ||||| || || || ||||||||||| Sbjct 5045 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCAT 4998 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||| || || || |||| Sbjct 5419 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCG 5360 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| || || || || | Sbjct 5359 AAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACG 5300 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | || |||||| |||| ||| | || || || ||||| || || Sbjct 5299 TTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTG 5240 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 5239 ACGAAGATCTGCATG 5225 >seq1009 Length=18926 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| | || || ||||||||| || || || | ||| Sbjct 8114 CCTTCTGGATGTTGTAGTCCGATAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 8173 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || ||||| ||||| || || || || || ||||| |||||| || || | |||| Sbjct 8174 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTG- 8232 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | | |||||| || |||||| || | ||| | || || || ||||| || || ||| Sbjct 8233 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 8292 Query 138604 AAAATCTGCATG 138615 || ||||||||| Sbjct 8293 AAGATCTGCATG 8304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496203878256480