Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1023 205 1e-47 seq7744 141 1e-28 seq584 123 3e-23 >seq1023 Length=18726 Score = 205 bits (226), Expect = 1e-47 Identities = 886/1384 (64%), Gaps = 34/1384 (2%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||||| |||||| ||||| | |||| ||||| || | ||| ||||| ||||| Sbjct 2550 TACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAA 2609 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || || |||||||| |||| || || ||||||||| || | | | | ||| Sbjct 2610 GCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGGAGTCCGTGCTTGATCACGTCCTCC 2669 Query 116023 TTGAGGGCGTCCCAGT----CGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTG 116078 ||||| | |||||| | || || | | | | ||||||| || ||||| Sbjct 2670 TTGAGCGTAGCCCAGTTCCACATACCCGACGACGGGGTGACGC-CCCACATGTCGAACTG 2728 Query 116079 GAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC 116138 || ||| || | | || ||||| |||| || ||||| || ||||| ||| || Sbjct 2729 GAAGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGTTCCTTGGC 2788 Query 116139 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT 116198 | || || ||| | ||| ||| || || ||||| || ||| || | Sbjct 2789 GATCTCCATCGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCTTGTTGAG 2848 Query 116199 TGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGAC 116257 || ||||| ||| || |||||| | || | ||||| | |||||||| | Sbjct 2849 CTCCCGGGCCTTCTCGCTCTCGAACGCGT-AGTTCATGAGGATAAACGCGTCCGCGAGGC 2907 Query 116258 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CA 116314 | ||||| || | || || ||||| || | ||| || ||||| || || ||| || Sbjct 2908 CCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGACTTGCGCGC---CTCGATCA 2964 Query 116315 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 116374 |||| || | || ||||| ||| | |||| || |||||| ||||| || | || Sbjct 2965 CGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGACCACCTTCGTCACTT 3024 Query 116375 CATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGA 116434 ||| | ||| | ||| | ||| | || |||| | || ||||||| || || | Sbjct 3025 CATACAACTTCTGGTAGTTGAAA-----ACTC-CTTCCTCCACGAACTTAGGCAGCGCCA 3078 Query 116435 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTAC 116494 ||||||| || ||||||| ||| || |||||||| || | || | Sbjct 3079 CAGACGCCAAGTTGCACACAGCCACCTCGTCTGGCGACGTGTACTCCATCACCTCACAGC 3138 Query 116495 ACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 116552 | || || || | || ||||| | ||||| || || ||||| ||| ||| Sbjct 3139 ATAAGTTGCTGGAGCGG--ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGC 3196 Query 116553 ATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612 |||||||| | |||| | ||| |||||||| | |||| | | || || ||| Sbjct 3197 GTCCTTGTACAACATAAAGGGCACTCCCGTCTCGATCTGGGCGTCCAATATGGCGAACCA 3256 Query 116613 TACATCGGC--GGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAG 116670 || | || ||| | || | ||| || |||||| |||||||||| ||| Sbjct 3257 --CAGCTGCTGGGCGTTGATCGTCTTGCGGGCGCGTCCCTCCGTCTCGTACTTTTCATAG 3314 Query 116671 AGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAA 116729 |||||||| || || || ||| |||| ||| |||| || || |||| | || || || Sbjct 3315 AGGGCCTCGAATTCGTCGCCC-CAGCACTCATAGAGTCCAGGGGCCTCGTTAGGGCAAAA 3373 Query 116730 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 116789 |||| ||| | ||| | || |||| ||||||||| || || || | ||| || || Sbjct 3374 GAGACTCCACTTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAGGCACCCAAAGGGC 3433 Query 116790 CGAGAAGAGATCCCGACAGC-GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 116848 |||| || || ||| || | || | || | || || || ||| | ||||| | Sbjct 3434 GTAGAACAGGTCGCGAGCGCGGTGCAAC-TCGTTGCCGTGGTTCTTACGGAGGTCCAAGA 3492 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---AC 116905 | || | | ||| |||||||| || |||| || | |||| || ||||| || | Sbjct 3493 ACTCGAACACATCTGCGTGCCAAGGCTCCAAATAGATGGCGAAGGAGCCCTTACGCTTGC 3552 Query 116906 GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATAC 116965 || |||||| || |||| ||| || ||||||| || || ||||| || ||||| | Sbjct 3553 CTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCAGCATGGGGATGATGC 3612 Query 116966 CATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGT 117025 ||| || ||| || || || || || ||| |||||| || | ||| || Sbjct 3613 CATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCTCGGATGTTGTGCATAC 3672 Query 117026 GCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGA 117085 || |||||||| || ||||| || ||||| || || | | | | || |||| | Sbjct 3673 TGATGCCAATACCTCCGGCCCATTTAGAGATACAGGCACATTGCTTTAACGTGTCGTAAA 3732 Query 117086 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTG 117145 | || || || ||||| | | | || | |||||||| ||||| |||||| | | Sbjct 3733 TGCCTTCAATTGAGTCGTCTTGCATGGCCAATAGGAAGCAAGACGACAGTTGTGGGCGCG 3792 Query 117146 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTAT 117205 | || || ||||| || || || || || || || |||| | ||| ||||| | Sbjct 3793 GCGTGCCGGCGTTAAAAAGTGTCGGGGTGGCATGCGTGAAAAACATTTGCGACATGAGCT 3852 Query 117206 CGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAA 117265 |||| ||||||| | | | | ||||| | ||| || || | || || ||||||| Sbjct 3853 CGTACGTCTCCAGGGCGGCCGCAATGTTGCTCTTGTGGATGCCAAGTGCCACGCGCATAA 3912 Query 117266 ACAT 117269 ||| Sbjct 3913 TCAT 3916 >seq7744 Length=2697 Score = 141 bits (156), Expect = 1e-28 Identities = 193/267 (72%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||||||| ||| || || |||||||||| ||| || |||||||| || |||||| Sbjct 1827 CCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTC 1768 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | || || ||||| ||||||||||| ||||||||| |||||| Sbjct 1767 TTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACAGCTGCGAAC 1708 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACT-TTGTATCAAACCACTTCATCGCCCACTG 127716 || | |||||||| | | || || ||| | || ||||||| | |||||| || Sbjct 1707 GCCAGCAGACGCTCCGGGTACGA-CGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTG 1649 Query 127717 TGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 127776 || || |||| | ||| |||| || | ||| || | || | | ||| || | Sbjct 1648 CGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGT 1589 Query 127777 TGGATCTTTGATGTACTTATCTATGAG 127803 || ||| ||||||||| | || ||||| Sbjct 1588 TGCATCCTTGATGTACGTGTCAATGAG 1562 >seq584 Length=26749 Score = 123 bits (136), Expect = 3e-23 Identities = 189/267 (71%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||||||| ||| || || |||||||||| ||| || |||||||| || |||||| Sbjct 11306 CCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTC 11365 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| |||| || || ||||| ||||||||||| |||||||| |||||| Sbjct 11366 TTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACGGTTGCGAAC 11425 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACT-TTGTATCAAACCACTTCATCGCCCACTG 127716 || | | ||||| | | || || ||| | || ||||||| | |||||| || Sbjct 11426 GCCAGCACGCGCTCCGGGTACGA-CGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTG 11484 Query 127717 TGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 127776 || || |||| | ||| || | || | ||| || | || | | ||| || | Sbjct 11485 CGCTTTCTTCTTCACACACGGAATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGT 11544 Query 127777 TGGATCTTTGATGTACTTATCTATGAG 127803 | ||| ||||||||| | || ||||| Sbjct 11545 CGCATCCTTGATGTACGTGTCAATGAG 11571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613434852163440