Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1023 181 2e-40 >seq1023 Length=18726 Score = 181 bits (200), Expect = 2e-40 Identities = 416/614 (68%), Gaps = 23/614 (4%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCT---CAGATAGTACAT 203895 ||||||||| ||||||| ||||||| |||| | || || || |||||||| Sbjct 2162 CTTGTCCACGGTGAACTTGATGGCGT---CGGCTTTCGGGCGTCCGCGCATGTAGTACAT 2218 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||||||||| || ||||||| ||| |||| | |||||| || | || ||||| | | | Sbjct 2219 GCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTTGCTGATGGT 2278 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGC 204015 |||||||| ||||| ||||| || ||||| || ||| ||| | | | || || || Sbjct 2279 CGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTACGCACCGCGGTCGGC 2338 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075 | || | | | | ||||||| |||||||||||||||||| || || || Sbjct 2339 CGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTGAC 2398 Query 204076 GTGTTGAGGCA-CATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CAT 204132 ||| | || | | ||| |||| ||| | |||||| ||||| || | ||| | Sbjct 2399 GTGGTCCGGGATCGCCTT--GACGTTCTGCACGGAGCCGCTGTCGTTCAAGA-TCTGGTT 2455 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | | ||| | ||| ||||| | | |||||||||| || ||||| ||||| Sbjct 2456 GCGCACGTCCGGCGTCCAGATGCCGAGCTCGATCAGCTCCTTCATCAGGTACTTGTTGAC 2515 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 |||| || ||||| | |||||| | ||| || ||| |||| ||| | || |||| Sbjct 2516 GATCGTGAACTCTCCAGCCAGCACTCGGCGGTTGTACATGTTGGACGTGTACGGCTCGAT 2575 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 | ||||||||| || | ||||| || ||| ||||| |||||||| |||| ||||| Sbjct 2576 AGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAAGCCGTCGGCATGGGGGCCACCAGCAG 2635 Query 204313 GGAGTTGCGCACACCGTATTTTTGGAC--CCTGCGCTTCAGAGAGGTCCAGTCGTGCAT- 204369 |||||||| | |||| || || ||| ||| || | | ||||| ||| Sbjct 2636 CGAGTTGCGGAGTCCGTGCTTGATCACGTCCT--CCTTGAGCGTAGCCCAGTTCCACATA 2693 Query 204370 --CG--CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGC 204425 || || ||| | |||||||||||||||||||| |||||||| | || | || Sbjct 2694 CCCGACGACGGGG--TGACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTAGCGGGCG 2751 Query 204426 TGCCCTTGTACGTC 204439 ||||| | ||||| Sbjct 2752 AGCCCTGGAACGTC 2765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795061431323040