Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq584 336 2e-87 seq7744 306 4e-78 seq1050 165 8e-36 seq93 149 6e-31 seq1009 116 4e-21 seq1059 98.7 1e-15 >seq584 Length=26749 Score = 336 bits (372), Expect = 2e-87 Identities = 563/802 (70%), Gaps = 24/802 (3%) Strand=Plus/Plus Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 ||||| | |||||||||||||||||||||||| ||||| | | || | || | | Sbjct 11111 AGCAGACGGTCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATGCCGATC 11170 Query 132781 AGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839 || ||| || |||| || | ||| ||| ||||||| | ||||||||| || Sbjct 11171 AGCTCCACAGGGAGCGAGTCACGCACGAACTCGT-GCTCGATCGTCACCGCGTCGCGCAC 11229 Query 132840 GATTTCCCTAACGCGCGCCGCGCTC-GGCCG-TTG--CACCAAATGCTTGAA---CATCA 132892 ||| || ||||| || ||| ||| | ||| ||||| ||||| | ||| | Sbjct 11230 GATCTCGTGCACGCG----GCTCTCCGGCAGCTTGTTCACCA---GCTTGGAGTACATGA 11282 Query 132893 AGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCA 132952 ||| || ||||| |||| ||||||||| | | || || ||||| ||| ||| Sbjct 11283 GGCACGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCA 11342 Query 132953 AGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGA 133012 ||| |||||||||||||| || |||||||| || || | | ||| |||||| |||| Sbjct 11343 GGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGA 11402 Query 133013 AGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG 133072 ||| |||||| |||| ||||| |||| || |||||| | ||| | || || || Sbjct 11403 AGATGCCCTCCACGGTTGCGAACGCCAGCACGCGCTCCGGGTACGACGACACTC-GCGGG 11461 Query 133073 -CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCG 133131 || ||| |||||||| | || || | || || ||||| ||||| |||||||| Sbjct 11462 TCGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGAATCGTATCGATGGCA 11521 Query 133132 TTCAACAAACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGGTCGAA 133188 || || || | | || |||| | | | | ||| ||||| ||||| |||| Sbjct 11522 CGCAGCA---GGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAGCAGCGAA 11578 Query 133189 TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCG 133248 |||| |||||||| | |||||| |||||||| || || ||||| ||||| || ||||| Sbjct 11579 TACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCC 11638 Query 133249 ACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTG 133308 |||||||||||| | ||| | | |||| || ||||| ||||||||||||||| Sbjct 11639 GGCACCTGCACTTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTG 11698 Query 133309 GCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCC 133368 || ||||| ||||||||||||||||||||||| ||||||||||| ||| | | || Sbjct 11699 GCAGCGAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCC 11758 Query 133369 CAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCT 133428 ||||| | ||| | | |||||||| ||||||| | ||||| ||||| ||||| || Sbjct 11759 CAGTCCTTCAGGTCGTGCGCCAGGTCCAGCTCCTCGGCCGTCCAGAACGAGGCCTCCGCC 11818 Query 133429 TTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGG 133488 || |||||||| ||||| ||| | || || || || | ||| |||||| ||| Sbjct 11819 TTCTTGTACATCTGCCACACGTCGTGCTCCTGGATCGGGAACAGCACGAACCGGTTCGGG 11878 Query 133489 TTTTCGCGCAACAGCGGCTCCG 133510 || ||| || | |||||||| Sbjct 11879 TTCTCGACCAGGAACGGCTCCG 11900 >seq7744 Length=2697 Score = 306 bits (338), Expect = 4e-78 Identities = 433/605 (72%), Gaps = 8/605 (1%) Strand=Plus/Minus Query 132910 TGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCG 132969 |||| ||||||||| | | || || ||||| ||| ||| ||| |||||||||||| Sbjct 1833 TGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCG 1774 Query 132970 CGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCC 133029 || || |||||||| || |||| | ||| |||||| ||||||| |||||| || || Sbjct 1773 CGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACAGCT 1714 Query 133030 GCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG-CGATCCAGCGCAGCGC 133088 ||||| |||| ||| ||||| | ||| | || || || || ||| ||||| Sbjct 1713 GCGAACGCCAGCAGACGCTCCGGGTACGACGACACTC-GCGGGTCGCACCACTTGAGCGC 1655 Query 133089 CCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTT 133148 ||| | || || | || || ||||| ||||| |||||||| || || || | | Sbjct 1654 CCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAGCA---GGTGGTC 1598 Query 133149 CTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTAC 133205 || |||| | | | | ||| ||||| ||||| |||||||| || ||||| | Sbjct 1597 CTTCTCCGTTGCATCCTTGATGTACGTGTCAATGAGCAGCGAATACACCTCTGAGTGGAT 1538 Query 133206 GTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTG 133265 |||||| |||||||| || || ||||| ||||| || ||||| |||||||||||| | Sbjct 1537 GTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCCGGCACCTGCACTTCATT 1478 Query 133266 AGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAG 133325 ||| | | |||| || ||||| ||||||||||||||||| ||||| |||||||| Sbjct 1477 GCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAAGGCCAG 1418 Query 133326 CACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTT 133385 ||||||||||||||| ||||||||||| ||| | | ||||||| | ||| | Sbjct 1417 CACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCCAGTCCTTCAGGTCGTG 1358 Query 133386 GGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCA 133445 | |||||||| ||||||| | ||||| ||||| ||||| || || |||||||| ||| Sbjct 1357 CGCCAGGTCCAGCTCCTCGGCCGTCCAGAACGAGGCCTCCGCCTTCTTGTACATCTGCCA 1298 Query 133446 CATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGG 133505 || ||| | || || || || | ||| |||||| ||||| ||| || | ||| Sbjct 1297 CACGTCGTGCTCCTGGATCGGGAACAGCACGAACCGGTTCGGGTTCTCGACCAGGAACGG 1238 Query 133506 CTCCG 133510 ||||| Sbjct 1237 CTCCG 1233 >seq1050 Length=18215 Score = 165 bits (182), Expect = 8e-36 Identities = 178/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || |||||| || ||||| || ||||| |||||||| |||||||| ||||||| ||| | Sbjct 4994 AACAATGCAGATTTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCC 5053 Query 38300 CACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | ||| | || |||| | || | || || | ||||| ||||| || || ||| Sbjct 5054 GTCGGACTCGATTGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCG 5112 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| ||||| | ||| ||||| |||||||| |||| ||||| || | ||||| Sbjct 5113 ACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACT 5172 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| ||||| |||||||||| |||||||||| || | |||||| Sbjct 5173 ACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGGCTGCGTGGCGGC 5225 Score = 152 bits (168), Expect = 5e-32 Identities = 165/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| |||||||| |||||||| ||||||| ||| | | Sbjct 5226 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 5285 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || || | ||||| ||||| || || ||||||| Sbjct 5286 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCA 5344 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 5345 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 5404 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| |||||||||| |||||||||| Sbjct 5405 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCG 5440 >seq93 Length=57835 Score = 149 bits (164), Expect = 6e-31 Identities = 174/230 (76%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| |||||||| || ||||| ||||||| ||| | | Sbjct 54632 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 54691 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || |||| |||| ||||| ||||| || |||||| |||| Sbjct 54692 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGACC 54749 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| ||||| || |||| ||||| || | |||||||| Sbjct 54750 AGCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACA 54809 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| || ||||| |||||||||| ||||||||||| || | || ||| Sbjct 54810 ACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGGC 54859 Score = 143 bits (158), Expect = 3e-29 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| |||||||| || ||||| | ||||| ||| | | Sbjct 54860 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 54919 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || |||| |||| ||||||||||| | ||||||| |||| Sbjct 54920 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAAGAGGGCA-TCCCGCCTGACC 54977 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| ||||| || |||| ||||| || | |||||||| Sbjct 54978 AGCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACA 55037 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| || ||||| |||||||||| ||||||||||| || | || ||| Sbjct 55038 ACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGGC 55087 Score = 143 bits (158), Expect = 3e-29 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| |||||||| || ||||| | ||||| ||| | | Sbjct 55088 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 55147 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || |||| |||| ||||||||||| | ||||||| |||| Sbjct 55148 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAAGAGGGCA-TCCCGCCTGACC 55205 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| ||||| || |||| ||||| || | |||||||| Sbjct 55206 AGCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACA 55265 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| || ||||| |||||||||| ||||||||||| || | || ||| Sbjct 55266 ACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGGC 55315 Score = 138 bits (152), Expect = 1e-27 Identities = 164/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| |||||||| || ||||| | ||||| ||| | | Sbjct 55316 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 55375 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || |||| |||| ||||||||||| | ||||||| |||| Sbjct 55376 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAAGAGGGCA-TCCCGCCTGACC 55433 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| ||||| || |||| ||||| || | |||||||| Sbjct 55434 AGCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACA 55493 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||| || ||||| |||||||||| |||||||||| Sbjct 55494 ACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCG 55530 >seq1009 Length=18926 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| | ||||| ||| | || Sbjct 8303 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 8244 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||||| | | | | || | ||||||| ||||| ||||| || |||||| ||||| Sbjct 8243 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCAT-CCCGCCTGACCA 8185 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| ||||| || |||||||| Sbjct 8184 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTATCGGACTACAA 8125 Query 38423 CATCCAAAAGG 38433 |||||| |||| Sbjct 8124 CATCCAGAAGG 8114 >seq1059 Length=18192 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||| ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 11422 GGAATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 11363 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 ||||| |||||||||||||| ||||| ||| |||||||| ||||||| ||| || | Sbjct 11362 ACCCTTTCGGACTACAACATCCAGAAGGAGAGC-ACGCTGCACCTGGTGCTTCGTCTGCG 11304 Query 38465 AGGCGG 38470 || || Sbjct 11303 TGGTGG 11298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500113817122560