Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1023 178 2e-39 seq7744 129 7e-25 seq584 125 9e-24 >seq1023 Length=18726 Score = 178 bits (196), Expect = 2e-39 Identities = 368/538 (68%), Gaps = 11/538 (2%) Strand=Plus/Minus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| || || || || || || || ||||| || || || | || ||| |||| | Sbjct 3832 TTCACGCATGCCACCCCGACACTTTTTAACGCCGGCACGCCGCGCCCACAACTGTCGTCT 3773 Query 111765 TGTTTCCTTATTG--CAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTG 111822 || ||||| |||| || |||| | || ||||| | |||||||||| ||| | | Sbjct 3772 TGCTTCCT-ATTGGCCATGCAAG-ACGACTCAATTGAAGGCATTTACGACACGTTAAAGC 3715 Query 111823 AATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAG 111882 |||||||| ||||| || ||||| || ||||| || || || || | || ||| Sbjct 3714 AATGTGCCTGTATCTCTAAATGGGCCGGAGGTATTGGCATCAGTATGCACAACATCCGAG 3655 Query 111883 CCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTC 111942 ||| ||| || |||| || || || || |||| || || || ||||| | Sbjct 3654 CCACCAACAGCTACATCCGAGGCACGAACGGCTCGTCCAATGGCATCATCCCCATGCTGC 3595 Query 111943 GCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTA 111999 | || ||||||| ||| ||||| || || |||| | || | || ||||| || Sbjct 3594 GGGTGTTTAACGACACCGCGCGGTACGTGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCT 3535 Query 112000 TCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCA 112059 |||| ||||| | ||||| |||||||| ||| | | |||||| | || | ||| | Sbjct 3534 TCGCCATCTATTTGGAGCCTTGGCACGCAGATGTGTTCGAGTTCTTGGACCTCCGTAAGA 3475 Query 112060 ACCAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGAT 112118 |||| || | ||| | | | | || ||||| || |||| ||| || ||| | || ||| Sbjct 3474 ACCACGGCAACGAGTTG-CACCGCGCTCGCGACCTGTTCTACGCCCTTTGGGTGCCTGAT 3416 Query 112119 CTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCA 112178 || ||||||||||| || || | | |||||| ||| ||||||||| || || |||| Sbjct 3415 CTGTTCATGAAGAGGGTGGAAGCCAATGGCAAGTGGAGTCTCTTTTGCCCTAACGAGGCC 3356 Query 112179 CCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAG 112235 || || |||| || ||| | ||| || || || || |||||||| |||||||||| Sbjct 3355 CCTGGACTCTATGAGTGCTG-GGGCGACGAATTCGAGGCCCTCTATGAAAAGTACGAG 3299 >seq7744 Length=2697 Score = 129 bits (142), Expect = 7e-25 Identities = 192/270 (71%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| ||| || ||||||| | |||||| | || || | |||||| | Sbjct 1562 CTCATTGACACGTACATCAAGGATGCAACGGAGAAGGACCACCTGCTGCGTGCCATCGAT 1621 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC---AAAG 102164 || | || ||| | | ||||||||| | ||||| | ||||||| || | | | Sbjct 1622 ACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTG 1681 Query 102165 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 ||| ||| || | ||||| || | || || || ||| ||||| ||||||||||| Sbjct 1682 TCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCAGCTGTGGAGGGCATCTTCTTCTC 1737 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 || || |||||| | || | |||||||||||||| || |||||||| || || |||| Sbjct 1738 GGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTT 1797 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| |||||||| ||| ||||||||||| Sbjct 1798 CTCGAACGAGCTGATCAGCCGTGACGAGGG 1827 >seq584 Length=26749 Score = 125 bits (138), Expect = 9e-24 Identities = 191/270 (71%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| ||| || ||||||| | |||||| | || || | |||||| | Sbjct 11571 CTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGAT 11512 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC---AAAG 102164 || |||| ||| | | ||||||||| | ||||| | ||||||| || | | | Sbjct 11511 ACGATTCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTG 11452 Query 102165 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 ||| ||| || | ||||| | | || || || || ||||| ||||||||||| Sbjct 11451 TCGTCGTACC----CGGAGCGCGTGCTGGCGTTCGCAACCGTGGAGGGCATCTTCTTCTC 11396 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 || || |||||| | || | |||||||||||||| || |||||||| || || |||| Sbjct 11395 GGGCTCGTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTT 11336 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| |||||||| ||| ||||||||||| Sbjct 11335 CTCGAACGAGCTGATCAGCCGTGACGAGGG 11306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620669198952480