Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1023 145 9e-30 seq720 127 2e-24 seq7744 96.9 4e-15 seq2829 91.5 2e-13 seq58 82.4 9e-11 >seq1023 Length=18726 Score = 145 bits (160), Expect = 9e-30 Identities = 648/1006 (64%), Gaps = 39/1006 (4%) Strand=Plus/Plus Query 110092 AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTA 110151 || |||||| | ||||| || ||||| || || | ||| |||||||| || |||||| Sbjct 2886 AGGATAAACGCGTCCGCGAGGCCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTG 2945 Query 110152 GAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTC 110211 || || || |||||||| ||||| |||||||||| || | || Sbjct 2946 GACTTGCGCGCCTCGATCACGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGG 3005 Query 110212 GTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG 110271 || || |||||| | ||||| | || | ||| | ||| |||||| | Sbjct 3006 GTGACCACCTTCGTCACTTCATACAACTTCTGGTAGTTGAAAA-------CTCCTTCCTC 3058 Query 110272 -ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG-- 110328 || | || || || || | |||||| | |||||||||| ||||||| | || Sbjct 3059 CACGAACTTAGGCAGCGCCACAGACGCCAAGTTGCACACAGCCACCTCGTCT--GGCGAC 3116 Query 110329 GTGTATTCCAAAATTTCCGTACACAAGTTG---GAACTCTTAATGACACCCAAGTTCTTC 110385 ||||| |||| | || || |||||| || | | || || | ||||| | Sbjct 3117 GTGTACTCCATCACCTCACAGCATAAGTTGCTGGAGCGGATCGTG---CCGAGGTTCTGC 3173 Query 110386 TGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTC 110445 || ||||| ||| |||| || ||||| || | ||| | || || || || || Sbjct 3174 TGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCGATC 3233 Query 110446 TGTGACTTGAGAATGGCCTTCCATACATCGGC--GGCGGGGACAGT--TGCGTTAGCGAG 110501 || | | | ||||| ||| || | || |||| || || |||| ||| | Sbjct 3234 TGGGCGTCCAATATGGCGAACCA--CAGCTGCTGGGCGTTGATCGTCTTGCGG--GCGCG 3289 Query 110502 ACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA-CACATCAGAAA 110560 || ||| ||||||||| || | | |||| ||||| | || | ||| ||| | | Sbjct 3290 TCCCTCCGTCTCGTACTTTTCATAGAGGGCCTCGAATTCGTCGCCCCAGCAC-TCATAGA 3348 Query 110561 GACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCA 110620 | || |||| || || || ||||| ||| || ||| | || |||||||||| Sbjct 3349 GTCCAGGGGCCTCGTTAGGGCAAAAGAGACTCCACTTGCCATTGGCTTCCACCCTCTTCA 3408 Query 110621 TGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGCCTCTTCATCA 110679 ||||||| ||||| | ||| | || |||| ||||| || || | || | || | Sbjct 3409 TGAACAGATCAGGCACCCAAAGGGCGTAGAACAGGTCGCGAGCGCGGTGCAAC-TCGTTG 3467 Query 110680 CCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG 110739 || ||||| || || ||||| || || | | ||| | |||||| || || | |||| Sbjct 3468 CCGTGGTTCTTACGGAGGTCCAAGAACTCGAACACATCTGCGTGCCAAGGCTCCAAATAG 3527 Query 110740 ACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTG 110796 | |||| ||| |||||||| | || |||||| || || || || ||| | || Sbjct 3528 ATGGCGAAGGAGCCCTTACGCTTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTA 3587 Query 110797 AAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGAC 110856 || |||| ||||| || || || |||| ||| || || || || | || | Sbjct 3588 AACACCCGCAGCATGGGGATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTG 3647 Query 110857 TTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGT 110916 || |||| || |||| ||| ||| || |||||||| || ||||| ||| || Sbjct 3648 TTGGTGGCTCGGATGTTGTGCATACTGATGCCAATACCTCCGGCCCATTTAGAGATACAG 3707 Query 110917 GCACACT-CTGTGA-GTGTACCATAAATACCATCAATCGAATCTGCCTTG-TTGGCAATT 110973 ||||| | || | | |||| | ||||| || ||||| || || | |||| |||| | | Sbjct 3708 GCACATTGCTTTAACGTGT--CGTAAATGCCTTCAATTGAGTC-GTCTTGCATGGCCAAT 3764 Query 110974 AGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCA 111033 || |||||||| |||| || || || ||||| || || || || ||||| || || ||| Sbjct 3765 AGGAAGCAAGACGACAGTTGTGGGCGCGGCGTGCCGGCGTTAAAAAGTGTCGGGGTGGCA 3824 Query 111034 TGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGG 111079 || |||| | ||| ||||| | ||| || || || |||| Sbjct 3825 TGCGTGAAAAACATTTGCGACATGAGCTCGTACGTCTCCAGGGCGG 3870 >seq720 Length=23280 Score = 127 bits (140), Expect = 2e-24 Identities = 338/510 (66%), Gaps = 15/510 (3%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| || || || || || | || | ||||| || || | ||||| Sbjct 13488 ATCTGCCGGTCGAATCGCCCGGGACGCAGAATGGCCTTGTCAAGGATGTCAGCGCGGTTC 13429 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | |||| || || | || |||| | || |||||| ||||| || || Sbjct 13428 GTACCAGCAAGCACCACCACACC---CTCACTCGAGTTGAAACCATCCATCTCAACCAGC 13372 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTC 11673 | |||||| | ||| | ||||||||| |||||| | | | | |||| ||| | Sbjct 13371 AACTGGTTTAGCGTGTTTTCACGCTCGTCGTTGCCGCCCG-AGAAGTTGCCCTT-GCTAC 13314 Query 11674 TTAC-----CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728 | | | ||||| ||||| ||||| ||||| ||||| ||||| || || || | Sbjct 13313 GTGCGCGGGCCACAGCATCAATTTCATCAATGAACACGATGCACGGGGCATTTGCGCGCG 13254 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 ||| | ||| || ||||| ||||| || || ||||| ||||||||||| | ||| | Sbjct 13253 CCTCCTTGAACAGGTCACGCACACGGGACGGCCCCACACCGACGAACATCTCGATGAAAT 13194 Query 11789 TTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 | |||| | ||||| |||||| ||| | | ||||||||| | || || || Sbjct 13193 CCGAACCAGAGATGCTGAA-GAAGGGCACACTGGCCTCACCAGCCGTAGCCTTCGCCAGC 13135 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 || |||||||||||||| || | || | | || ||||| |||||| || |||||| Sbjct 13134 AGCGTCTTACCCGTACCGGGAGGTCCGACTAACAGCGCGCCCTTGGGGATTTTCGCACCA 13075 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967 | | |||||| | || ||||||||||| | |||| | |||| |||| Sbjct 13074 AGCTCGGTGAAGCGCTTCTGGTTGCGAAGGAAGTCCACGAACTCCATGATCTCCTTCTTG 13015 Query 11968 GCGGAGTCGATACCCTCAACATCGGTGAAA 11997 || ||| | ||| | ||||| ||||| Sbjct 13014 GCCTCGTCCACACCGGCCACATCCTTGAAA 12985 >seq7744 Length=2697 Score = 96.9 bits (106), Expect = 4e-15 Identities = 174/253 (69%), Gaps = 5/253 (2%) Strand=Plus/Minus Query 119528 GATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGAT 119587 ||| ||||| || ||||| || ||||||||||| || | ||||| ||||| ||||| Sbjct 1813 GATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGAT 1754 Query 119588 GGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTC 119647 || || || || || |||||||||||||||||| ||||| || | |||||||| Sbjct 1753 GGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACAGCTGCGAACGCCAGCAGACGCTC 1694 Query 119648 AGCAAAAGGTCGAGACT----TGTCGAACCACTTGAGAGCCCAGTTGGCCTTACGCTCTA 119703 | | | ||| ||| |||| |||||||||| ||||||| || || || | Sbjct 1693 CG-GGTACGACGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCA 1635 Query 119704 TGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCAGCACCATCCTTAATAT 119763 || |||| || | |||||| | || || | ||| || | ||||||| || | Sbjct 1634 CACACGGGATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGTTGCATCCTTGATGT 1575 Query 119764 ATTTATCAATGAG 119776 | | |||||||| Sbjct 1574 ACGTGTCAATGAG 1562 >seq2829 Length=7531 Score = 91.5 bits (100), Expect = 2e-13 Identities = 295/446 (66%), Gaps = 13/446 (3%) Strand=Plus/Plus Query 11551 CGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCT 11607 ||||| ||||||||||| || | || ||| | |||| ||||| || ||||| ||| Sbjct 2934 CGGTTCGTAGCGGCAATAACGATAACTCCATTGGCATTTCCTTCGAAGCCATCCATCTCT 2993 Query 11608 GTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAA 11667 || || | |||||| | ||| || || || |||||||| ||| | ||| || | ||| Sbjct 2994 GTCAGCAACTGGTTTAGCGTTTGCTCCCGTTCATCGTTTGAGTTGA-ACCCCCCG-CGAG 3051 Query 11668 CGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGT-TGGCACG 11726 | |||| || || || || || |||||||| || | ||||||| | ||| || | Sbjct 3052 C-CTTC--GCCAAC-GCATCGATTTCATCGATAAAGATGATACACTGCGGGTACTGCGAG 3107 Query 11727 TGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 ||||| ||| || || || || | | || || |||||| | |||||| || || Sbjct 3108 -GCCTGCGTGAAGAGGTCTCGCACTCTCGCAGCGCCTCGACCTACCAGCATCTCCACAAA 3166 Query 11787 GTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAG 11846 | | || ||||| | ||||| || | ||| || | |||| ||| || Sbjct 3167 ATCCGATGCTGAACAGAACAAGAAGGCCACCCCCGCTTCAGATGCAACAGCTCTAGCTAG 3226 Query 11847 GAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 || ||||| || || || | || |||| ||| | | || || | |||||| || Sbjct 3227 CAGCGTCTTGCCTGTGCCCGATGGACCACAGAGCATCACTCCTTTAGGCACCTTGGCGCC 3286 Query 11907 ACTTCCAAAGTAGC-GCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCT 11965 | | | ||| | | || || || | | ||||||||| | |||||| || |||| | Sbjct 3287 AATGGCCTGGTACCTGGTCGGGTGTC-TCAAGAAGTCCACGACCTCCTCCAGCTCCTTCC 3345 Query 11966 TGGCGGAGTCGATACCCTCAACATCG 11991 |||| ||| |||||| | |||||| Sbjct 3346 GGGCGCCGTCAATACCCGCCACATCG 3371 >seq58 Length=62634 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/163 (72%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 ||||| || | || || || ||||| | |||||| || || |||| ||||| | ||| Sbjct 53304 TTACCGCGCAACGGGAAGACACCATAGTAATCTCTGCCAACCACGGCAAGACCGCCCACA 53363 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGT--G 168547 |||| ||||| || ||||| || || || | ||| || || || | || || | | Sbjct 53364 GCGACGGTTTTGGCGGAATCTCCTTCCGTGAGGATCAGAGTGCAGT--CCTTGCTCTTCG 53421 Query 168548 CCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGT 168590 |||||||||| ||||| ||||| |||| || ||||| || || Sbjct 53422 CCGTACCAGCGTTGTTGGCATCATCCAGCTTAGGGATGCCCGT 53464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588906545005200