Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq7744 118 1e-21 seq584 109 6e-19 seq807 87.8 2e-12 >seq7744 Length=2697 Score = 118 bits (130), Expect = 1e-21 Identities = 197/282 (70%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 || || ||| ||| | ||||| || ||| || || || || ||||||| ||||| Sbjct 1845 GCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCA 1786 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || |||||||| | ||| | || | |||||| || || ||||||||||| Sbjct 1785 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATG 1726 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACT-TTGTGTCAAA 117452 ||||||||| || ||||| | || ||||| | | | || ||| ||| | ||| | Sbjct 1725 CCCTCCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACTCGCGGGTCGCA 1667 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512 ||| || | ||||| | ||| ||||||| | ||| || | || | |||||| | Sbjct 1666 CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAG 1607 Query 117513 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 117554 | || | ||| || | | ||||||| ||||| ||||||| Sbjct 1606 CAGGTGGTCCTTCTCCGTTGCATCCTTGATGTACGTGTCAAT 1565 >seq584 Length=26749 Score = 109 bits (120), Expect = 6e-19 Identities = 195/282 (69%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 || || ||| ||| | ||||| || ||| || || || || ||||||| ||||| Sbjct 11288 GCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCA 11347 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || |||||||| | ||| | || | |||||| || || ||||||||||| Sbjct 11348 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATG 11407 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACT-TTGTGTCAAA 117452 |||||||| || ||||| | | |||||| | | | || ||| ||| | ||| | Sbjct 11408 CCCTCCACGGTTGCGAACGCCAGCACGCGCTCCGGGTACGA-CGACACTCGCGGGTCGCA 11466 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512 ||| || | ||||| | ||| ||||||| | ||| || | || | |||||| | Sbjct 11467 CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGAATCGTATCGATGGCACGCAG 11526 Query 117513 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 117554 | || | ||| || | ||||||| ||||| ||||||| Sbjct 11527 CAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAAT 11568 >seq807 Length=21995 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 1102 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 1043 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 1042 CCGGTAGGAGCTT 1030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589911226514160