Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2043 206 2e-48 seq671 102 7e-17 >seq2043 Length=11907 Score = 206 bits (228), Expect = 2e-48 Identities = 411/603 (68%), Gaps = 12/603 (2%) Strand=Plus/Plus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 ||||| ||| ||||| || || || | || || ||||| || || || | |||| Sbjct 5048 AGCTGCTTCTGGAGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGG 5107 Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29910 |||||||| || || | || || | || || || |||| ||| || | | |||| Sbjct 5108 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 5167 Query 29911 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 29970 ||||||||||| || || || || || |||||||| |||| | |||||| | ||| || Sbjct 5168 CTGGCGATGTTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAG 5227 Query 29971 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATG 30030 || | ||| |||||| |||||| ||||| || | |||||||||| || || ||||| Sbjct 5228 GACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT- 5286 Query 30031 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT-TCTGGGT 30085 | || || || || ||||| || ||| | ||| || | ||| || | | Sbjct 5287 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATT 5343 Query 30086 TGTTC-CTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 30144 ||| | | | | ||| | | | ||||| ||||| ||| || | |||||| Sbjct 5344 TGTGCGCAGCTT--GTCAATAACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTAGTCG 5401 Query 30145 GCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30204 || |||||||||||||| |||||| ||||| | ||||||||| ||||| |||||||| Sbjct 5402 GCGTGCATGTCCGTGTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCG 5461 Query 30205 AGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTG 30264 ||||| || |||||| || | || | |||||| | | || | || || ||| Sbjct 5462 AGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGATCCATTG 5521 Query 30265 GCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACG 30324 |||||||||| | | ||||||| ||| | | | ||| || |||| | Sbjct 5522 CCGTCCCAGATGTGGATATCCTTCTCCTGCAGCGTGTGCGCACTCGTGTCGCCACTGATG 5581 Query 30325 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGA 30384 |||||||||||||||||| | ||| | ||| ||||| | |||||||||||| | ||| Sbjct 5582 AACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAAGGGG 5641 Query 30385 AAC 30387 ||| Sbjct 5642 AAC 5644 >seq671 Length=24399 Score = 102 bits (112), Expect = 7e-17 Identities = 206/306 (67%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 48329 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 48388 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 16892 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 16833 Query 48389 ACCCCTCTCGACCCGAAAGGGGTTGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 48448 || | || ||| | ||| | | | | ||| ||||| || ||||| | |||||| Sbjct 16832 TCCGCGCTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 16773 Query 48449 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 48508 | |||||||| ||| | ||| ||||| || ||| || || | || || || || || Sbjct 16772 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTGCTTGAGCGCGAGTCC 16713 Query 48509 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGGCCAGGTCCGTCTT 48568 ||| | || ||||| | ||||| ||| ||| | | | ||||||||||||| Sbjct 16712 GGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 16653 Query 48569 TACCAGGGCCCTGCCGAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACC 48628 || ||| || ||||| | ||||| |||| | || ||| |||| |||||| ||| Sbjct 16652 GACGAGGCCCTTGCCGCCCGCGGGGATCACGGCGTCGTAAGCAGCCGACAGGTCCAGACC 16593 Query 48629 CGCGGC 48634 |||||| Sbjct 16592 CGCGGC 16587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408570618425282