Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1023 374 2e-98 seq584 210 4e-49 seq7744 199 7e-46 >seq1023 Length=18726 Score = 374 bits (414), Expect = 2e-98 Identities = 1233/1894 (65%), Gaps = 87/1894 (5%) Strand=Plus/Plus Query 212595 TAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTC 212654 ||||||||||||||||| || ||||| |||| ||| | |||||| | ||||| || Sbjct 2211 TAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTT- 2269 Query 212655 TTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAG--GTTCAGGGACTGACTCT 212712 ||| | | || |||| ||| ||||| | ||| || |||||||||| Sbjct 2270 ----GCTGA-TGGTCGGGTC--------GGC---GATGTGGATGTTGAGCGACTGACTCT 2313 Query 212713 GGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCC 212772 || ||| | | | | ||| || | || ||| | | | |||| || ||||| Sbjct 2314 GGCAAATGTACGCACCGCGGTCGGCCGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCC 2373 Query 212773 ACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACC 212832 |||| |||||| | | || |||| || || |||| | || ||||||||| || | Sbjct 2374 ACACCGTCTTGTACTTCTCCTTGACGTGGTCCGGGATCGCCTTGACGTTCTGCACGGAGC 2433 Query 212833 CCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTC---CA 212889 | |||| | | ||| ||||| |||| |||||| ||| | ||| || Sbjct 2434 CGCTGTCGTTCAAGATCTGGTTGCGCACGTCCGGCGTCCAGATGCC---GAGCTCGATCA 2490 Query 212890 GGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGT 212949 | ||| | ||||| |||||| ||| ||| || || | ||||| | | | || Sbjct 2491 GCTCCTTCATCAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCGGCGGTTGT 2550 Query 212950 AAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGG 213009 | | ||| || ||||| |||||||| ||||||||| || || ||||| || ||| | Sbjct 2551 ACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAAG 2610 Query 213010 CTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG--CG 213067 | || |||||||| |||||||| || ||| | | |||||||| | || | | | Sbjct 2611 CCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGGAGTCCGTGCTTG---ATCACGTCCT 2667 Query 213068 CCGA-AGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGT 213126 || ||| ||||||| ||| | || ||| | | || ||| |||||||| Sbjct 2668 CCTTGAGCGTAGCCCAGTTCCACATACCCGAC--GACGGGGTG----ACGCCCCACATGT 2721 Query 213127 CAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCT 213186 | ||||| |||||||| ||||| |||| ||||||| | | ||| ||||| | | Sbjct 2722 CGAACTGGAAGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGTT 2781 Query 213187 CCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCC 213246 ||||||| | ||| |||| || || ||| ||| |||||||||| || || || | | Sbjct 2782 CCTTGGCGATCTCCATCGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCT 2841 Query 213247 TGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAG 213306 ||||||||| | ||||| | | ||| | ||||| | ||| | || | Sbjct 2842 TGTTGAGCTCCCGGGCCTTCTCGCTCTCGAACGCGTAGTTCATGAGGATAAACGCGTCCG 2901 Query 213307 CCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCC 213365 | || |||||||| || || |||||||| | ||| | || ||| |||||| | || ||| Sbjct 2902 CGAGGCCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGACTTGCGCGC-CTCG 2960 Query 213366 TCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTG 213425 || |||||| ||||| |||||||| |||||| | |||||||||| |||| || || Sbjct 2961 ATCACGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGACCACCTTCGTC 3020 Query 213426 ACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGG 213485 || | || | || || ||||| || || |||| ||| |||| |||||| Sbjct 3021 ACTTCATACAACTTCTGGTAGTTGAAAACT------CCTTCCTCCACGAACTTAGGCAGC 3074 Query 213486 GCGATGCTGGCCAGGTTGCAAACGGCCACCTC--CTGAGAGTCTGTGTACTCCATGATCT 213543 || | |||| |||||| || |||||||| ||| | | | ||||||||||| | || Sbjct 3075 GCCACAGACGCCAAGTTGCACACAGCCACCTCGTCTG-GCGAC-GTGTACTCCATCACCT 3132 Query 213544 CGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGG 213603 | ||| | ||||||| | ||||| ||||| |||||||| ||||| ||||| ||||| Sbjct 3133 CACAGCATAAGTTGCTGGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGG 3192 Query 213604 CAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC 213663 | | |||||||| | ||| |||| || ||||| | ||||| ||| ||| | Sbjct 3193 CCGCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCGATCTGGGCGTCCAATATGGCGA 3252 Query 213664 TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTT 213723 ||| || | | ||| |||| | | | | | ||| ||| |||||||| || Sbjct 3253 ACCACAGCTGCTGGGCGTTGATCGTCTTGCGGGCGCGTCCCTCCGT---CTCGTACTTTT 3309 Query 213724 CGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCG---G 213780 | ||||| | | |||||||| ||||||| | | ||||| || || || | Sbjct 3310 CATAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAGTCCAGG---GGCCTCGTTAG 3366 Query 213781 GACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCC 213840 | || | ||| ||||| | || | || || |||| ||||||||| || || |||| Sbjct 3367 GGCAAAAGAGACTCCACTTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAGGCACCC 3426 Query 213841 ACAGCGCGGTGAACAGGTCCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCGCA 213897 | || ||| ||||||||| | | | | ||||| || ||| || || | Sbjct 3427 AAAGGGCGTAGAACAGGTCGCGAGCGCGGTGCAACTCGT---TGCCGTGGTTCTTACGGA 3483 Query 213898 GATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG 213957 | || | || || || | || |||||||| ||||||| |||||||| |||| |||| Sbjct 3484 GGTCCAAGAACTCGAACACATCTGCGTGCCAAGGCTCCAAATAGATGGCGAAGGAGCCCT 3543 Query 213958 GCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGG 214014 | |||| |||||||||||||| || || ||| || | ||||| | || Sbjct 3544 TACGCTTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCAGCATGG 3603 Query 214015 GTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGT 214074 | | | || |||||| ||||| || || || || | || ||| | | || Sbjct 3604 GGATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCTCGGATGT 3663 Query 214075 TGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAG 214134 || ||| || || || || ||||| | || ||||| ||| || || | | | Sbjct 3664 TGTGCATACTGATGCCAATACCTCCGGCCCATTTAGAGATACAGGCACATTGCTTTAACG 3723 Query 214135 TCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCT 214194 | || ||||| | || ||| ||| | | || | |||||| ||| || | Sbjct 3724 TGTCGTAAATGCCTTCAATTGAGTCGTCTTGCATGGCCAATAGGAAGCAAGACGACAGTT 3783 Query 214195 GGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAG 214254 | || | | || ||| | ||| ||||| || ||| ||||||| | | |||| | | | Sbjct 3784 GTGGGCGCGGCGTGCCGGCGTTAAAAAGTGTCGGGGTGGCATGCGTGAAAAACATTTGCG 3843 Query 214255 AGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGC 214314 | | |||| ||| ||||||||| | | | |||| | ||||||||| || || | Sbjct 3844 ACATGAGCTCGTACGTCTCCAGGGCGGCCGCAATGTTGCTCTTGTGGATGCCAAGTGC-C 3902 Query 214315 AC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCTT------GAGC 214367 || | ||| | ||| ||||| || | ||| | |||| ||| || || Sbjct 3903 ACGCGCATAATCATTTGCTGCGGACGCTCCA---CCACTTT---GCCGTTTACGCGGAAG 3956 Query 214368 AGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAGTAGGTATGATCGTTCC---CG 214424 ||||| |||||| ||||| || |||||||||||| ||| || | || || || Sbjct 3957 AGGTACCCGCGCTCGAGAGTTTTAAACCCAAAGTAGTCGTA---ATCAAAGTCCCGGTCG 4013 Query 214425 TGTATGAGGGCAGCGTCCAGCTCTTCCGCGTGCT 214458 || |||| ||| | || |||||| ||| ||||| Sbjct 4014 TGGATGATGGCCGAGTTCAGCTCGTCCTTGTGCT 4047 >seq584 Length=26749 Score = 210 bits (232), Expect = 4e-49 Identities = 489/730 (67%), Gaps = 17/730 (2%) Strand=Plus/Plus Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012 |||||| | || || ||| |||||||||||| ||||||| ||||||||| || Sbjct 11110 CAGCAGACGGTCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATGCCGAT 11169 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 || ||| || | | | | ||||| | ||| ||| ||| || || | ||| Sbjct 11170 CAGCTCCACAGGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCAC 11229 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 |||| | |||||| ||| | | ||||| ||| ||||| || | | ||| Sbjct 11230 GATCTCGTGCACGCGGCTCTCCGGCAGCTTGTTCACCAG---CTTGGAGTACATGAGGCA 11286 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 || |||||| |||||| ||| ||||| |||||||| ||| |||| ||||||| || || Sbjct 11287 CGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCC 11346 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 |||||||| || | || ||||||||||| || | ||| ||||| ||||||||||| Sbjct 11347 AGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGAT 11406 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGC-CTCTCTCC--GAAAGAAG-CGTTCTTGTCTG 48308 ||||||||| | |||||||| ||| | | |||| | | || | | || | | Sbjct 11407 GCCCTCCACGGTTGCGAACGC---CAGCACGCGCTCCGGGTACGACGACACTCGCGGGT- 11462 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 | ||| |||||||||| || |||||||| | || || ||||| || ||||| | Sbjct 11463 CGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGAATCGTATCGATGGCAC 11522 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGT 48425 | | || | | ||| || ||| | || || | |||||||| | | Sbjct 11523 GCAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAGCAGC---GAAT 11579 Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485 ||| ||| ||||| | ||||| || ||||||||||| ||||||||| | |||||| Sbjct 11580 ACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCCG 11639 Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545 |||||||||||| || ||| || ||| ||||| || || || || || | Sbjct 11640 GCACCTGCACTTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGG 11699 Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCC 48605 |||| |||||||| || || || || | ||| |||||||||| || || || Sbjct 11700 CAGCGAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCC 11759 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || ||| | ||| | ||||||||| || || | |||||||| || || || | Sbjct 11760 AGTCCTTCAGGTCGTGCGCCAGGTCCAGCTCCTCGGCCGTCCAGAACGAGGCCTCCGCCT 11819 Query 48666 TTTTGTACAT 48675 | |||||||| Sbjct 11820 TCTTGTACAT 11829 >seq7744 Length=2697 Score = 199 bits (220), Expect = 7e-46 Identities = 374/546 (68%), Gaps = 8/546 (1%) Strand=Plus/Minus Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 || |||||| |||||| ||| ||||| |||||||| ||| |||| ||||||| || ||| Sbjct 1845 GCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCA 1786 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| || | || ||||||||||| || | ||| ||||| |||||||||||| Sbjct 1785 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATG 1726 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGAGAT 48312 |||||||| || |||||||| || | ||| | | || | | || | | | Sbjct 1725 CCCTCCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGACGACACTCGCGGGT-CGCA 1667 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 ||| |||||||||| || |||||||| | || || ||||| || ||||| || | Sbjct 1666 CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAG 1607 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACAT 48429 || | | ||| ||| ||| | || || | |||||||| | |||| Sbjct 1606 CAGGTGGTCCTTCTCCGTTGCATCCTTGATGTACGTGTCAATGAGCAGC---GAATACAC 1550 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||| ||||| | ||||| || ||||||||||| ||||||||| | |||||| ||| Sbjct 1549 CTCTGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCCGGCAC 1490 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||||||||| || ||| || ||| ||||| || || || || || ||||| Sbjct 1489 CTGCACTTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGC 1430 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC 48609 |||||||| || || || || | ||| |||||||||| || || |||| | Sbjct 1429 GAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCCAGTC 1370 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 || | ||| | ||||||||| || || | |||||||| || || || || || Sbjct 1369 CTTCAGGTCGTGCGCCAGGTCCAGCTCCTCGGCCGTCCAGAACGAGGCCTCCGCCTTCTT 1310 Query 48670 GTACAT 48675 |||||| Sbjct 1309 GTACAT 1304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931422948994560