Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14]
9,434 sequences; 74,863,594 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq1023 374 2e-98
seq584 210 4e-49
seq7744 199 7e-46
>seq1023
Length=18726
Score = 374 bits (414), Expect = 2e-98
Identities = 1233/1894 (65%), Gaps = 87/1894 (5%)
Strand=Plus/Plus
Query 212595 TAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTC 212654
||||||||||||||||| || ||||| |||| ||| | |||||| | ||||| ||
Sbjct 2211 TAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTT- 2269
Query 212655 TTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAG--GTTCAGGGACTGACTCT 212712
||| | | || |||| ||| ||||| | ||| || ||||||||||
Sbjct 2270 ----GCTGA-TGGTCGGGTC--------GGC---GATGTGGATGTTGAGCGACTGACTCT 2313
Query 212713 GGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCC 212772
|| ||| | | | | ||| || | || ||| | | | |||| || |||||
Sbjct 2314 GGCAAATGTACGCACCGCGGTCGGCCGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCC 2373
Query 212773 ACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACC 212832
|||| |||||| | | || |||| || || |||| | || ||||||||| || |
Sbjct 2374 ACACCGTCTTGTACTTCTCCTTGACGTGGTCCGGGATCGCCTTGACGTTCTGCACGGAGC 2433
Query 212833 CCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTC---CA 212889
| |||| | | ||| ||||| |||| |||||| ||| | ||| ||
Sbjct 2434 CGCTGTCGTTCAAGATCTGGTTGCGCACGTCCGGCGTCCAGATGCC---GAGCTCGATCA 2490
Query 212890 GGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGT 212949
| ||| | ||||| |||||| ||| ||| || || | ||||| | | | ||
Sbjct 2491 GCTCCTTCATCAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCGGCGGTTGT 2550
Query 212950 AAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGG 213009
| | ||| || ||||| |||||||| ||||||||| || || ||||| || ||| |
Sbjct 2551 ACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAAG 2610
Query 213010 CTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG--CG 213067
| || |||||||| |||||||| || ||| | | |||||||| | || | | |
Sbjct 2611 CCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGGAGTCCGTGCTTG---ATCACGTCCT 2667
Query 213068 CCGA-AGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGT 213126
|| ||| ||||||| ||| | || ||| | | || ||| ||||||||
Sbjct 2668 CCTTGAGCGTAGCCCAGTTCCACATACCCGAC--GACGGGGTG----ACGCCCCACATGT 2721
Query 213127 CAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCT 213186
| ||||| |||||||| ||||| |||| ||||||| | | ||| ||||| | |
Sbjct 2722 CGAACTGGAAGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGTT 2781
Query 213187 CCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCC 213246
||||||| | ||| |||| || || ||| ||| |||||||||| || || || | |
Sbjct 2782 CCTTGGCGATCTCCATCGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCT 2841
Query 213247 TGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAG 213306
||||||||| | ||||| | | ||| | ||||| | ||| | || |
Sbjct 2842 TGTTGAGCTCCCGGGCCTTCTCGCTCTCGAACGCGTAGTTCATGAGGATAAACGCGTCCG 2901
Query 213307 CCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCC 213365
| || |||||||| || || |||||||| | ||| | || ||| |||||| | || |||
Sbjct 2902 CGAGGCCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGACTTGCGCGC-CTCG 2960
Query 213366 TCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTG 213425
|| |||||| ||||| |||||||| |||||| | |||||||||| |||| || ||
Sbjct 2961 ATCACGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGACCACCTTCGTC 3020
Query 213426 ACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGG 213485
|| | || | || || ||||| || || |||| ||| |||| ||||||
Sbjct 3021 ACTTCATACAACTTCTGGTAGTTGAAAACT------CCTTCCTCCACGAACTTAGGCAGC 3074
Query 213486 GCGATGCTGGCCAGGTTGCAAACGGCCACCTC--CTGAGAGTCTGTGTACTCCATGATCT 213543
|| | |||| |||||| || |||||||| ||| | | | ||||||||||| | ||
Sbjct 3075 GCCACAGACGCCAAGTTGCACACAGCCACCTCGTCTG-GCGAC-GTGTACTCCATCACCT 3132
Query 213544 CGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGG 213603
| ||| | ||||||| | ||||| ||||| |||||||| ||||| ||||| |||||
Sbjct 3133 CACAGCATAAGTTGCTGGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGG 3192
Query 213604 CAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC 213663
| | |||||||| | ||| |||| || ||||| | ||||| ||| ||| |
Sbjct 3193 CCGCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCGATCTGGGCGTCCAATATGGCGA 3252
Query 213664 TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTT 213723
||| || | | ||| |||| | | | | | ||| ||| |||||||| ||
Sbjct 3253 ACCACAGCTGCTGGGCGTTGATCGTCTTGCGGGCGCGTCCCTCCGT---CTCGTACTTTT 3309
Query 213724 CGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCG---G 213780
| ||||| | | |||||||| ||||||| | | ||||| || || || |
Sbjct 3310 CATAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAGTCCAGG---GGCCTCGTTAG 3366
Query 213781 GACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCC 213840
| || | ||| ||||| | || | || || |||| ||||||||| || || ||||
Sbjct 3367 GGCAAAAGAGACTCCACTTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAGGCACCC 3426
Query 213841 ACAGCGCGGTGAACAGGTCCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCGCA 213897
| || ||| ||||||||| | | | | ||||| || ||| || || |
Sbjct 3427 AAAGGGCGTAGAACAGGTCGCGAGCGCGGTGCAACTCGT---TGCCGTGGTTCTTACGGA 3483
Query 213898 GATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG 213957
| || | || || || | || |||||||| ||||||| |||||||| |||| ||||
Sbjct 3484 GGTCCAAGAACTCGAACACATCTGCGTGCCAAGGCTCCAAATAGATGGCGAAGGAGCCCT 3543
Query 213958 GCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGG 214014
| |||| |||||||||||||| || || ||| || | ||||| | ||
Sbjct 3544 TACGCTTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCAGCATGG 3603
Query 214015 GTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGT 214074
| | | || |||||| ||||| || || || || | || ||| | | ||
Sbjct 3604 GGATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCTCGGATGT 3663
Query 214075 TGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAG 214134
|| ||| || || || || ||||| | || ||||| ||| || || | | |
Sbjct 3664 TGTGCATACTGATGCCAATACCTCCGGCCCATTTAGAGATACAGGCACATTGCTTTAACG 3723
Query 214135 TCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCT 214194
| || ||||| | || ||| ||| | | || | |||||| ||| || |
Sbjct 3724 TGTCGTAAATGCCTTCAATTGAGTCGTCTTGCATGGCCAATAGGAAGCAAGACGACAGTT 3783
Query 214195 GGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAG 214254
| || | | || ||| | ||| ||||| || ||| ||||||| | | |||| | | |
Sbjct 3784 GTGGGCGCGGCGTGCCGGCGTTAAAAAGTGTCGGGGTGGCATGCGTGAAAAACATTTGCG 3843
Query 214255 AGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGC 214314
| | |||| ||| ||||||||| | | | |||| | ||||||||| || || |
Sbjct 3844 ACATGAGCTCGTACGTCTCCAGGGCGGCCGCAATGTTGCTCTTGTGGATGCCAAGTGC-C 3902
Query 214315 AC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCTT------GAGC 214367
|| | ||| | ||| ||||| || | ||| | |||| ||| || ||
Sbjct 3903 ACGCGCATAATCATTTGCTGCGGACGCTCCA---CCACTTT---GCCGTTTACGCGGAAG 3956
Query 214368 AGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAGTAGGTATGATCGTTCC---CG 214424
||||| |||||| ||||| || |||||||||||| ||| || | || || ||
Sbjct 3957 AGGTACCCGCGCTCGAGAGTTTTAAACCCAAAGTAGTCGTA---ATCAAAGTCCCGGTCG 4013
Query 214425 TGTATGAGGGCAGCGTCCAGCTCTTCCGCGTGCT 214458
|| |||| ||| | || |||||| ||| |||||
Sbjct 4014 TGGATGATGGCCGAGTTCAGCTCGTCCTTGTGCT 4047
>seq584
Length=26749
Score = 210 bits (232), Expect = 4e-49
Identities = 489/730 (67%), Gaps = 17/730 (2%)
Strand=Plus/Plus
Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012
|||||| | || || ||| |||||||||||| ||||||| ||||||||| ||
Sbjct 11110 CAGCAGACGGTCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATGCCGAT 11169
Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072
|| ||| || | | | | ||||| | ||| ||| ||| || || | |||
Sbjct 11170 CAGCTCCACAGGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCAC 11229
Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132
|||| | |||||| ||| | | ||||| ||| ||||| || | | |||
Sbjct 11230 GATCTCGTGCACGCGGCTCTCCGGCAGCTTGTTCACCAG---CTTGGAGTACATGAGGCA 11286
Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192
|| |||||| |||||| ||| ||||| |||||||| ||| |||| ||||||| || ||
Sbjct 11287 CGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCC 11346
Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252
|||||||| || | || ||||||||||| || | ||| ||||| |||||||||||
Sbjct 11347 AGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGAT 11406
Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGC-CTCTCTCC--GAAAGAAG-CGTTCTTGTCTG 48308
||||||||| | |||||||| ||| | | |||| | | || | | || | |
Sbjct 11407 GCCCTCCACGGTTGCGAACGC---CAGCACGCGCTCCGGGTACGACGACACTCGCGGGT- 11462
Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368
| ||| |||||||||| || |||||||| | || || ||||| || ||||| |
Sbjct 11463 CGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGAATCGTATCGATGGCAC 11522
Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGT 48425
| | || | | ||| || ||| | || || | |||||||| | |
Sbjct 11523 GCAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAGCAGC---GAAT 11579
Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485
||| ||| ||||| | ||||| || ||||||||||| ||||||||| | ||||||
Sbjct 11580 ACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCCG 11639
Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545
|||||||||||| || ||| || ||| ||||| || || || || || |
Sbjct 11640 GCACCTGCACTTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGG 11699
Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCC 48605
|||| |||||||| || || || || | ||| |||||||||| || || ||
Sbjct 11700 CAGCGAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCC 11759
Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665
|| ||| | ||| | ||||||||| || || | |||||||| || || || |
Sbjct 11760 AGTCCTTCAGGTCGTGCGCCAGGTCCAGCTCCTCGGCCGTCCAGAACGAGGCCTCCGCCT 11819
Query 48666 TTTTGTACAT 48675
| ||||||||
Sbjct 11820 TCTTGTACAT 11829
>seq7744
Length=2697
Score = 199 bits (220), Expect = 7e-46
Identities = 374/546 (68%), Gaps = 8/546 (1%)
Strand=Plus/Minus
Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193
|| |||||| |||||| ||| ||||| |||||||| ||| |||| ||||||| || |||
Sbjct 1845 GCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCA 1786
Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253
||||||| || | || ||||||||||| || | ||| ||||| ||||||||||||
Sbjct 1785 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATG 1726
Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGAGAT 48312
|||||||| || |||||||| || | ||| | | || | | || | | |
Sbjct 1725 CCCTCCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGACGACACTCGCGGGT-CGCA 1667
Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372
||| |||||||||| || |||||||| | || || ||||| || ||||| || |
Sbjct 1666 CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAG 1607
Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACAT 48429
|| | | ||| ||| ||| | || || | |||||||| | ||||
Sbjct 1606 CAGGTGGTCCTTCTCCGTTGCATCCTTGATGTACGTGTCAATGAGCAGC---GAATACAC 1550
Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489
||| ||||| | ||||| || ||||||||||| ||||||||| | |||||| |||
Sbjct 1549 CTCTGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCCGGCAC 1490
Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549
||||||||| || ||| || ||| ||||| || || || || || |||||
Sbjct 1489 CTGCACTTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGC 1430
Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC 48609
|||||||| || || || || | ||| |||||||||| || || |||| |
Sbjct 1429 GAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCCAGTC 1370
Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669
|| | ||| | ||||||||| || || | |||||||| || || || || ||
Sbjct 1369 CTTCAGGTCGTGCGCCAGGTCCAGCTCCTCGGCCGTCCAGAACGAGGCCTCCGCCTTCTT 1310
Query 48670 GTACAT 48675
||||||
Sbjct 1309 GTACAT 1304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931422948994560
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