Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq7744 208 1e-48 seq584 197 3e-45 seq1023 105 1e-17 >seq7744 Length=2697 Score = 208 bits (230), Expect = 1e-48 Identities = 376/543 (69%), Gaps = 10/543 (2%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | ||| |||||| ||||| ||| | || ||||| Sbjct 1298 TGGCAGATGTACAAGAAGGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGCG 1357 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| || | | |||| || | | |||||| | || ||||| ||||| Sbjct 1358 CACGACCTGAAGGACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTG 1417 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 |||| ||||| || ||| || || || ||||||||||| ||| | || |||| | Sbjct 1418 CTGGCCTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTCAGC 1477 Query 25660 AGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAAT 25719 | ||||||||| ||||||| || ||||||||||||||||| |||||||| || Sbjct 1478 AATGAAGTGCAGGTGCCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAAC 1537 Query 25720 GTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCCGAG 25776 | ||||| ||||||||| | ||| || || |||||||| | || | | ||| Sbjct 1538 ATCCACTCAGAGGTGTATTC---GCTGCTCATTGACACGTACATCAAGGATGCAACGGAG 1594 Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGG 25836 | || | ||| | |||||||||| || || | | |||| ||| |||| ||| Sbjct 1595 AAGGACCACCTGCTGCGTGCCATCGATACGATCCCGTGTGTGAAGAAGAAAGCGCACTGG 1654 Query 25837 GCCATGAAGTGGATC-AACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895 || | |||||| | | | || || | | ||| ||||| ||| | || || || Sbjct 1655 GCGCTCAAGTGGTGCGACCCGCGAGTG-TCGTCGTACCCGGAGCGTCTGCTGGCGTTCGC 1713 Query 25896 TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGA 25954 ||||||||||||||||| ||| || ||||| ||| ||||||||||||||||| || Sbjct 1714 AGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGC-TCCATCTTCTGGCTCAAGAAGC 1772 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 || |||||| || ||| ||| || |||||||| |||||| | |||||||| | | Sbjct 1773 GCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGCATGC 1832 Query 26015 ACA 26017 ||| Sbjct 1833 ACA 1835 Score = 93.3 bits (102), Expect = 8e-14 Identities = 123/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 26152 GGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGC 26211 ||||||||| | |||||| |||| ||||| |||| |||||||||| |||||||| | Sbjct 2095 GGCATGAACTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTAC 2154 Query 26212 CAGCTGGGACTCGCCAGACTCTACAGTACGCCTA--ACCCGTTCGACTTTATGGAAAACA 26269 |||||| | | | |||||| ||| | |||||||||||| ||||| | | Sbjct 2155 TCGCTGGGTGTGTCGAAGATCTACA--ACGTAAAGAACCCGTTCGACTGGATGGACATGA 2212 Query 26270 TATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTA 26318 | ||| || | || ||||||||||| || || ||| | || ||||| || Sbjct 2213 TCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 2261 >seq584 Length=26749 Score = 197 bits (218), Expect = 3e-45 Identities = 383/559 (69%), Gaps = 10/559 (2%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | ||| |||||| ||||| ||| | || ||||| Sbjct 11835 TGGCAGATGTACAAGAAGGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGCG 11776 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| || | | |||| || | | |||||| | || ||||| ||||| Sbjct 11775 CACGACCTGAAGGACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTG 11716 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 |||| ||||| || ||| || || || ||||||||||| ||| | || |||| | Sbjct 11715 CTGGCCTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTCAGC 11656 Query 25660 AGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAAT 25719 | ||||||||| ||||||| || ||||||||||||||||| |||||||| || Sbjct 11655 AATGAAGTGCAGGTGCCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAAC 11596 Query 25720 GTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCCGAG 25776 | ||||| ||||||||| | ||| || || |||||||| | || | | ||| Sbjct 11595 ATCCACTCGGAGGTGTATTC---GCTGCTCATTGACACGTACATCAAGGATGCGACGGAG 11539 Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGG 25836 | || | ||| | |||||||||| || || | | |||| ||| |||| ||| Sbjct 11538 AAGGACCACCTGCTGCGTGCCATCGATACGATTCCGTGTGTGAAGAAGAAAGCGCACTGG 11479 Query 25837 GCCATGAAGTGGATC-AACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895 || | |||||| | | | || || | | ||| ||||| || | || || || Sbjct 11478 GCGCTCAAGTGGTGCGACCCGCGAGTG-TCGTCGTACCCGGAGCGCGTGCTGGCGTTCGC 11420 Query 25896 TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGA 25954 | |||||||||||||| ||| || ||||| ||| | ||||||||||||||| || Sbjct 11419 AACCGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGC-TCGATCTTCTGGCTCAAGAAGC 11361 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 || |||||| || ||| ||| || |||||||| |||||| | |||||||| | | Sbjct 11360 GCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGCATGC 11301 Query 26015 ACAGAGATTTTGCCTGCCT 26033 ||| || || || ||||| Sbjct 11300 ACACGGACTTCGCGTGCCT 11282 >seq1023 Length=18726 Score = 105 bits (116), Expect = 1e-17 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 221095 CAGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTG 221154 |||| |||| | || || |||||| || | ||| ||||| | ||||| | | | Sbjct 2489 CAGCTCCTTCATCAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCGGCGGTT 2548 Query 221155 GTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCT 221214 ||||| ||| || ||| |||| ||||| ||||||||| || |||||||| |||||| Sbjct 2549 GTACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGA 2608 Query 221215 GGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 || || |||||||| ||||||||||| |||||| |||||| Sbjct 2609 AGCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGGAGTCCG 2651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928735265976960