Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq7744 118 1e-21 seq584 109 7e-19 seq58 95.1 1e-14 >seq7744 Length=2697 Score = 118 bits (130), Expect = 1e-21 Identities = 197/282 (70%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 64948 ATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACT 65007 ||||||| ||||| ||||||| | | || ||| | || | | |||||| | || Sbjct 1565 ATTGACACGTACATCAAGGATGCAACGGAGAAGGACCACCTGCTGCGTGCCATCGATACG 1624 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAA-AGTCTCG 65066 | || ||| | ||||||| ||| | ||||| | || |||| ||| | ||| ||| Sbjct 1625 ATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTGTCG 1684 Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 || | | | ||||| || | ||||| || ||||||||| ||||||||||| || || Sbjct 1685 -TCGTACCCGGAGCGTCTGCTGGCGTTCGCAGCTGTGGAGGGCATCTTCTTCTCGGGCTC 1743 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||| | || | ||| | |||||||| || |||||||| ||||| ||||||| || Sbjct 1744 GTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAA 1803 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || || ||| || ||||| | ||| ||| || || Sbjct 1804 CGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGC 1845 >seq584 Length=26749 Score = 109 bits (120), Expect = 7e-19 Identities = 195/282 (69%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 64948 ATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACT 65007 ||||||| ||||| ||||||| | || ||| | || | | |||||| | || Sbjct 11568 ATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGATACG 11509 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAA-AGTCTCG 65066 | || ||| | ||||||| ||| | ||||| | || |||| ||| | ||| ||| Sbjct 11508 ATTCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTGTCG 11449 Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 || | | | |||||| | | ||||| || |||||||| ||||||||||| || || Sbjct 11448 -TCGTACCCGGAGCGCGTGCTGGCGTTCGCAACCGTGGAGGGCATCTTCTTCTCGGGCTC 11390 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||| | || | ||| | |||||||| || |||||||| ||||| ||||||| || Sbjct 11389 GTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAA 11330 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || || ||| || ||||| | ||| ||| || || Sbjct 11329 CGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGC 11288 >seq58 Length=62634 Score = 95.1 bits (104), Expect = 1e-14 Identities = 241/358 (67%), Gaps = 8/358 (2%) Strand=Plus/Minus Query 14430 TGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCATGGTGAAG 14489 |||||||||||||| |||| | ||||| | || | || |||||||| || || || | Sbjct 52441 TGAAGGTGGCACAATTGGCTGGTTATGTGTCAGAGCACTCCGCGTACCATCACGGCGA-G 52383 Query 14490 TATCCTTAGC-GGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAACAACATT 14548 | || || || | || || || |||| | |||| || |||||||| Sbjct 52382 CAGAGTTTGCAGGGCTGTATCGTCAACATGGCTCAGGACTTTGTCGGAAGCAACAACATC 52323 Query 14549 AACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGATGCTTCT 14608 |||| || || ||||| || ||||||||| | ||||| || |||||||| | Sbjct 52322 CACCTCCTGTCGCCAATCGGTCAGTTCGGTACGCGTTTGATGGGCGGCAAGGATGCAGC- 52264 Query 14609 CAGA-CGAGGTACATTTTCACAAAACTT--ACCAAGGAGGCTCGCAAGATCTTTGATCCT 14665 ||| | | || |||||||| || ||| | ||| ||||| ||||| ||||||| Sbjct 52263 CAGCGCTCGTTATATTTTCACGAA-CTTGGAACAACTCA-CTCGCCGGATCTATGATCCT 52206 Query 14666 CGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTGAACCAGACTTT 14725 | || | | ||| | ||||||||||| || || | || ||||| || || | Sbjct 52205 CTTGACAATGATGTGCTCGAATACTTGGACGAAGACGGTCAATCAATTGAGCCGGAATGG 52146 Query 14726 TACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTACGGGTT 14783 || || || | | | |||||||| || || || || | ||| |||||||| ||||||| Sbjct 52145 TATATCCCGATTATCCCAATGGTACTTGTCAACGGCAGCGACGGTATCGGAACGGGTT 52088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596499249529920