Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq770 125 2e-23 seq2059 96.9 1e-14 seq949 95.1 4e-14 seq724 87.8 5e-12 >seq770 Length=22305 Score = 125 bits (138), Expect = 2e-23 Identities = 183/255 (72%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 ||||||||||| |||||||| | || || ||||| |||||||| ||||| ||||| Sbjct 7996 CGACGCTGAATGTAACCAGTCTCGGCCGTCTTCACAGCCGTATCAATCAGACCTTCACGA 8055 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 |||||||| || ||||| || | |||| ||| | ||| | | || |||| Sbjct 8056 CCACCCATGGCGTGGAAAAAGAATTCTTGAGGTGTCAAACCCTTCAGGTACGAATTCTCC 8115 Query 302713 ACGAAACCACGCGCCTCGGG--CGAATCGTCGAACTTG--GTAAAGTGTGGCAGGGTCCT 302768 ||||||||||| || || | || ||| |||| |||| || ||||| || | Sbjct 8116 ACGAAACCACGACTTTCCGGACCCAA--GTCATCCTTGCCGTAA--TGCGGCAGCGTACG 8171 Query 302769 GTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAAT 302828 || | | | ||||| |||||||||||||| || ||||||||||| |||| || | ||| Sbjct 8172 GTGGTTAAAACCGTACGGGATACGCTTTCCTTCCACGTTCTGCTGGCCCACACAAGCAAT 8231 Query 302829 CATCTGCGAAATATT 302843 |||||||| ||||| Sbjct 8232 AATCTGCGAGATATT 8246 >seq2059 Length=10269 Score = 96.9 bits (106), Expect = 1e-14 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || | || |||||| |||||||| || || | ||| || ||||| |||||||| Sbjct 7042 CCGTGCGAGACCAGACAATCGCGCTCCATCTCTCCCATACGCAGGCCACCTTCGCGAGCA 6983 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| ||||| || || || | || ||||| ||||| || | Sbjct 6982 CGACCCTCCATGGGCTGGCGCGTCAGCATGGTCACGGGACCACGCGAGCGCGAGTGGATC 6923 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || || | ||||||||||| || ||||||||||| | ||| ||||||||||| Sbjct 6922 TTGTCGTCGACCATATGCTTCAGGCGCTGGTAGAACGTGGGTCCGATGAAGAT 6870 >seq949 Length=22177 Score = 95.1 bits (104), Expect = 4e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || || |||||||||||||| ||||| ||| | || || || || || Sbjct 17359 CTTGATGGCCGAAGCAAGGGCACCAAGCGAGTCGCGGTCAAGGTAGTTCGTCGGCTCATC 17418 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 ||| | ||| | |||||| | || |||||| || ||||| || || ||||| |||||||| Sbjct 17419 AAGCACAAGGATGTGCGGGTTCAGCCACATAGCGGCAGCGAGCACGACCTTCACCTTCTG 17478 Query 354123 TCCGCCTGATAG 354134 || || || || Sbjct 17479 ACCACCGGACAG 17490 >seq724 Length=23227 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/72 (88%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 410481 TTATGTGCCCGCG--TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGG 410538 |||||||| |||| || ||||||||||||||| |||||||| ||||||| ||||||| Sbjct 7462 TTATGTGCGCGCGGCTGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGG 7521 Query 410539 GTTCGAGTCCCG 410550 |||||||||||| Sbjct 7522 GTTCGAGTCCCG 7533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471639696807258