Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1023 136 4e-27 seq93 123 2e-23 seq1050 104 2e-17 >seq1023 Length=18726 Score = 136 bits (150), Expect = 4e-27 Identities = 365/551 (66%), Gaps = 29/551 (5%) Strand=Plus/Plus Query 138474 CTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCG 138533 || ||||| || || ||||| || |||| | || | || || || |||| ||||| Sbjct 2483 CTCGATCAGCTCCTTCATCAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCG 2542 Query 138534 ACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGC 138593 || ||| |||||| ||| | ||||| | || ||||||||||| || ||||| || Sbjct 2543 GCGGTTGTACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGC 2602 Query 138594 CGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGAT 138653 ||||| || ||||||||| ||||||| || || || || | |||| ||||||| Sbjct 2603 CGTGGAAGCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGGAGTCCGT---GCTTGAT 2659 Query 138654 -TCGT--TCCTTGAGCGACGACCAGTCCCACAAATC--GCTA-GGTTTTTTGTTCCACAT 138707 ||| |||||||||| | ||||| ||||| | | | | || | | |||||| Sbjct 2660 CACGTCCTCCTTGAGCGTAGCCCAGTTCCACATACCCGACGACGGGGTGACGCCCCACAT 2719 Query 138708 ATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAA 138767 ||| |||| || || ||| || ||||| ||| | | ||| ||||| || | Sbjct 2720 GTCGAACTGGAAGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTACGGGCCGAG 2779 Query 138768 CTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTG 138827 || | || | ||| | || ||| | || | |||| || || ||| || | Sbjct 2780 TTCCTTGGCGATCTCCATCGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTT 2839 Query 138828 CTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACG------GCATGCGGAGCATCGTGAA 138881 || |||||| ||||||| |||||||| ||| |||| ||| | || Sbjct 2840 CTTGTTGAGCTCCCGGGCCTTCTCGCTCTCGAACGCGTAGTTCATGAGGA------TAAA 2893 Query 138882 CGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTT 138941 |||||| || || || || ||||| | |||| ||||| || |||| || ||| | Sbjct 2894 CGCGTCCGCGAGGCCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGAC----T 2949 Query 138942 TGCG-GCTTCGAT---AGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGA 138997 |||| || ||||| || || ||||| || ||||||| |||||||| || || || Sbjct 2950 TGCGCGCCTCGATCACGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGA 3009 Query 138998 CCACCTTAGTC 139008 ||||||| ||| Sbjct 3010 CCACCTTCGTC 3020 >seq93 Length=57835 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || ||||| || || || | | Sbjct 54860 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 54919 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||| |||||||| || || || || || || Sbjct 54920 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAAGAGGGCATCCCGCCTGACCAG 54979 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || ||||| ||||| | | || || || ||| Sbjct 54980 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 55039 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| || ||| ||||| |||| ||||||| ||| Sbjct 55040 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGGC 55087 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || ||||| || || || | | Sbjct 55088 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 55147 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||| |||||||| || || || || || || Sbjct 55148 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAAGAGGGCATCCCGCCTGACCAG 55207 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || ||||| ||||| | | || || || ||| Sbjct 55208 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 55267 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| || ||| ||||| |||| ||||||| ||| Sbjct 55268 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGGC 55315 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || |||||||| || || | | Sbjct 54632 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 54691 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||| ||||| || || || || || || || Sbjct 54692 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 54751 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || ||||| ||||| | | || || || ||| Sbjct 54752 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 54811 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| || ||| ||||| |||| ||||||| ||| Sbjct 54812 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGGC 54859 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || ||||| || || || | | Sbjct 55316 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 55375 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||| |||||||| || || || || || || Sbjct 55376 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAAGAGGGCATCCCGCCTGACCAG 55435 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || ||||| ||||| | | || || || ||| Sbjct 55436 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 55495 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||| ||||| || ||| ||||| |||| Sbjct 55496 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCG 55530 >seq1050 Length=18215 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || |||||||| || || | | Sbjct 5226 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 5285 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || ||||| || ||||| || || || || ||||| || Sbjct 5286 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 5345 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||||||||||| | | || || || ||| Sbjct 5346 CAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 5405 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| ||||| |||| |||| || || Sbjct 5406 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGGCTGCGTGGTGG 5452 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| || | || ||||| || || || || || |||||||| || || | Sbjct 4995 ACAATGCAGATTTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCG 5054 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| | | || | || || || ||||| || ||||| || || || || ||||| Sbjct 5055 TCGGACTCGATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGAC 5114 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || | ||||| ||||| || ||||||||||| | | || || || Sbjct 5115 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTAC 5174 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| ||||| || ||| ||||| |||| |||| || ||| Sbjct 5175 AACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGGCTGCGTGGCGGC 5225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449844545825520