Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14]
9,434 sequences; 74,863,594 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq1050 132 3e-26
seq1009 132 3e-26
seq93 129 4e-25
seq1059 105 4e-18
>seq1050
Length=18215
Score = 132 bits (146), Expect = 3e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807
||||| || | || || ||| |||||||| | || ||||||||| ||||| |||||
Sbjct 5455 TTTCCACCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCG 5396
Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867
|| |||| | || ||||| ||||| ||||||||||| || || |||||||| ||
Sbjct 5395 CTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGC 5336
Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927
|| | ||||||||||| | || || || || ||| | ||||| || | |||
Sbjct 5335 GGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCC 5276
Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| || | || |||||||| ||||| || ||||| || ||||||||||||
Sbjct 5275 ACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 5225
Score = 122 bits (134), Expect = 6e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || | || || ||| |||||||| | || ||||||||| ||||| |||||
Sbjct 5224 CCGCCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 5165
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| | || ||||| ||||| ||||||||||| || || |||||||| ||||
Sbjct 5164 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 5105
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| ||||||||||| | || || || || ||| | ||||| || | ||| ||
Sbjct 5104 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATCGAGTCCGACGGCTCCACG 5045
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| | || |||||||| ||||| || ||||| || || ||||||||
Sbjct 5044 TCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCAT 4998
>seq1009
Length=18926
Score = 132 bits (146), Expect = 3e-26
Identities = 149/197 (76%), Gaps = 8/197 (4%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| ||||||||||| |||| | || || || ||||| || |||||||
Sbjct 8114 CCTTCTGGATGTTGTAGTCCGATAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 8173
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
|||| || |||||||| |||| | ||||||||||| | ||||| || ||||| ||
Sbjct 8174 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGAC--AT- 8230
Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| || || || | ||| || || | || |||||||| ||||| ||||||||
Sbjct 8231 -TGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTC 8289
Query 34964 ACAAAGATCTGCATGAT 34980
|||||||||||||||||
Sbjct 8290 ACAAAGATCTGCATGAT 8306
>seq93
Length=57835
Score = 129 bits (142), Expect = 4e-25
Identities = 157/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||||||| | || ||||||||||||||| ||||| || |||| | ||
Sbjct 55072 CAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTC 55013
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| || ||||||||||| || |||||||| |||| | ||||| |||||
Sbjct 55012 CTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCTTTGTC 54953
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || ||||| |||||| | ||||| || | ||| || || | || || ||
Sbjct 54952 CTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGT 54893
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
||| ||||| || ||||| |||||||||||||||
Sbjct 54892 CTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 54859
Score = 129 bits (142), Expect = 4e-25
Identities = 157/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||||||| | || ||||||||||||||| ||||| || |||| | ||
Sbjct 55300 CAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTC 55241
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| || ||||||||||| || |||||||| |||| | ||||| |||||
Sbjct 55240 CTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCTTTGTC 55181
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || ||||| |||||| | ||||| || | ||| || || | || || ||
Sbjct 55180 CTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGT 55121
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
||| ||||| || ||||| |||||||||||||||
Sbjct 55120 CTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 55087
Score = 129 bits (142), Expect = 4e-25
Identities = 157/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||||||| | || ||||||||||||||| ||||| || |||| | ||
Sbjct 55528 CAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTC 55469
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| || ||||||||||| || |||||||| |||| | ||||| |||||
Sbjct 55468 CTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCTTTGTC 55409
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || ||||| |||||| | ||||| || | ||| || || | || || ||
Sbjct 55408 CTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGT 55349
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
||| ||||| || ||||| |||||||||||||||
Sbjct 55348 CTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 55315
Score = 127 bits (140), Expect = 1e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||||||| | || ||||||||||||||| ||||| || |||| | ||
Sbjct 54844 CAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTC 54785
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| || ||||||||||| || |||||||| |||| | |||||||||||
Sbjct 54784 CTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 54725
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || ||||| |||||| | ||||| || | ||| || || | || || ||
Sbjct 54724 CTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGT 54665
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| ||||| || ||||| || |||||||||||
Sbjct 54664 CTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 54632
>seq1059
Length=18192
Score = 105 bits (116), Expect = 4e-18
Identities = 82/98 (84%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||||||| | |||||||||||||| ||||| |||||||| ||| |||| | ||
Sbjct 11313 AGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 11372
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863
||||| ||||| |||||||||||||| || ||||||||
Sbjct 11373 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 11410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325655352859646
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