Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_022988.1 Length=74210 Score E Sequences producing significant alignments: (Bits) Value seq2494 163 1e-35 >seq2494 Length=8003 Score = 163 bits (180), Expect = 1e-35 Identities = 336/498 (67%), Gaps = 9/498 (2%) Strand=Plus/Minus Query 64829 CGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 64888 ||||| ||||||||| || ||| || | ||| | | ||||||||||| || ||||| || Sbjct 4300 CGCCTTCATCGACGCAGAACACGCCATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGA 4241 Query 64889 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 64948 | | ||| || || ||||||||| | ||||| | || |||||||||| || Sbjct 4240 CATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGA 4181 Query 64949 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 65008 | ||| ||| ||| || | | || | |||| || | ||| |||||| || ||||| Sbjct 4180 CACGCTCATCAGGTCGGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCGCTGGT 4121 Query 65009 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 65068 |||||| || ||||| || || || || || ||| || | | ||||| ||||| || Sbjct 4120 GCCGCGTGCGGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCACTGCAGGCGCGACT 4061 Query 65069 CATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGAC 65125 |||| ||||| |||| |||||||| || | | |||| |||| ||| | | Sbjct 4060 CATGAGTCAGGCGCTGCGAAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA- 4002 Query 65126 GCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGAC 65185 ||| | |||||| | ||| ||||| | || | | | || ||| | |||| Sbjct 4001 --TCTTCCTGAACCAGATTCGCCAGAAGGTGGGGATCAT---CTTCGGATCTCCTGAGGT 3947 Query 65186 CACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCAT 65245 || |||| || | ||| || | | |||||| || || | |||| | ||||||| Sbjct 3946 TACGTCGGGTGGAACAGCTCTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGCAA 3887 Query 65246 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAA 65305 | || ||||| ||||| ||| |||||||||| || ||||||||| | ||| Sbjct 3886 GACGGCCATCAAGGAGGGCGACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAA 3827 Query 65306 GAACAAGCTGGCCCCGCC 65323 |||||| || ||| |||| Sbjct 3826 GAACAAACTTGCCTCGCC 3809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237319910560654