Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1050 91.5 1e-13 >seq1050 Length=18215 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| ||||| || |||| |||| | Sbjct 5226 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 5285 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || | ||| | | || || || |||||| || || || ||| | || || ||| Sbjct 5286 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 5345 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||||||||||| | || || ||||||||| Sbjct 5346 CAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 5405 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAA 107785 || || |||||||| ||| ||||| ||||| || | |||| || ||||| Sbjct 5406 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGGCTGCGTGGTGGAAA 5455 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| ||||| ||||| || | || ||||| ||||| || |||| |||| | Sbjct 4997 AATGCAGATTTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTC 5056 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || | | | | | || || || |||||| || || || ||| | || || || Sbjct 5057 GGACTCGATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCA 5116 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||||||||||| | || || |||||||| Sbjct 5117 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 5176 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| || |||||||| ||| ||||| ||||| || | |||| || || Sbjct 5177 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGGCTGCGTGGCGG 5224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398830938392026